PRIMER_SEQUENCE_ID=NM_000208 SEQUENCE=GAGAAGGACGCGCGGCCCCCAGCGCTCTTGGGGGCCGCCTCGGAGCATGACCCCCGCGGGCCAGCGCCGCGCGCCTGATCCGAGGAGACCCCGCGCTCCCGCAGCCATGGGCACCGGGGGCCGGCGGGGGGCGGCGGCCGCGCCGCTGCTGGTGGCGGTGGCCGCGCTGCTACTGGGCGCCGCGGGCCACCTGTACCCCGGAGAGGTGTGTCCCGGCATGGATATCCGGAACAACCTCACTAGGTTGCATGAGCTGGAGAATTGCTCTGTCATCGAAGGACACTTGCAGATACTCTTGATGTTCAAAACGAGGCCCGAAGATTTCCGAGACCTCAGTTTCCCCAAACTCATCATGATCACTGATTACTTGCTGCTCTTCCGGGTCTATGGGCTCGAGAGCCTGAAGGACCTGTTCCCCAACCTCACGGTCATCCGGGGATCACGACTGTTCTTTAACTACGCGCTGGTCATCTTCGAGATGGTTCACCTCAAGGAACTCGGCCTCTACAACCTGATGAACATCACCCGGGGTTCTGTCCGCATCGAGAAGAACAATGAGCTCTGTTACTTGGCCACTATCGACTGGTCCCGTATCCTGGATTCCGTGGAGGATAATCACATCGTGTTGAACAAAGATGACAACGAGGAGTGTGGAGACATCTGTCCGGGTACCGCGAAGGGCAAGACCAACTGCCCCGCCACCGTCATCAACGGGCAGTTTGTCGAACGATGTTGGACTCATAGTCACTGCCAGAAAGTTTGCCCGACCATCTGTAAGTCACACGGCTGCACCGCCGAAGGCCTCTGTTGCCACAGCGAGTGCCTGGGCAACTGTTCTCAGCCCGACGACCCCACCAAGTGCGTGGCCTGCCGCAACTTCTACCTGGACGGCAGGTGTGTGGAGACCTGCCCGCCCCCGTACTACCACTTCCAGGACTGGCGCTGTGTGAACTTCAGCTTCTGCCAGGACCTGCACCACAAATGCAAGAACTCGCGGAGGCAGGGCTGCCACCAATACGTCATTCACAACAACAAGTGCATCCCTGAGTGTCCCTCCGGGTACACGATGAATTCCAGCAACTTGCTGTGCACCCCATGCCTGGGTCCCTGTCCCAAGGTGTGCCACCTCCTAGAAGGCGAGAAGACCATCGACTCGGTGACGTCTGCCCAGGAGCTCCGAGGATGCACCGTCATCAACGGGAGTCTGATCATCAACATTCGAGGAGGCAACAATCTGGCAGCTGAGCTAGAAGCCAACCTCGGCCTCATTGAAGAAATTTCAGGGTATCTAAAAATCCGCCGATCCTACGCTCTGGTGTCACTTTCCTTCTTCCGGAAGTTACGTCTGATTCGAGGAGAGACCTTGGAAATTGGGAACTACTCCTTCTATGCCTTGGACAACCAGAACCTAAGGCAGCTCTGGGACTGGAGCAAACACAACCTCACCACCACTCAGGGGAAACTCTTCTTCCACTATAACCCCAAACTCTGCTTGTCAGAAATCCACAAGATGGAAGAAGTTTCAGGAACCAAGGGGCGCCAGGAGAGAAACGACATTGCCCTGAAGACCAATGGGGACAAGGCATCCTGTGAAAATGAGTTACTTAAATTTTCTTACATTCGGACATCTTTTGACAAGATCTTGCTGAGATGGGAGCCGTACTGGCCCCCCGACTTCCGAGACCTCTTGGGGTTCATGCTGTTCTACAAAGAGGCCCCTTATCAGAATGTGACGGAGTTCGATGGGCAGGATGCGTGTGGTTCCAACAGTTGGACGGTGGTAGACATTGACCCACCCCTGAGGTCCAACGACCCCAAATCACAGAACCACCCAGGGTGGCTGATGCGGGGTCTCAAGCCCTGGACCCAGTATGCCATCTTTGTGAAGACCCTGGTCACCTTTTCGGATGAACGCCGGACCTATGGGGCCAAGAGTGACATCATTTATGTCCAGACAGATGCCACCAACCCCTCTGTGCCCCTGGATCCAATCTCAGTGTCTAACTCATCATCCCAGATTATTCTGAAGTGGAAACCACCCTCCGACCCCAATGGCAACATCACCCACTACCTGGTTTTCTGGGAGAGGCAGGCGGAAGACAGTGAGCTGTTCGAGCTGGATTATTGCCTCAAAGGGCTGAAGCTGCCCTCGAGGACCTGGTCTCCACCATTCGAGTCTGAAGATTCTCAGAAGCACAACCAGAGTGAGTATGAGGATTCGGCCGGCGAATGCTGCTCCTGTCCAAAGACAGACTCTCAGATCCTGAAGGAGCTGGAGGAGTCCTCGTTTAGGAAGACGTTTGAGGATTACCTGCACAACGTGGTTTTCGTCCCCAGAAAAACCTCTTCAGGCACTGGTGCCGAGGACCCTAGGCCATCTCGGAAACGCAGGTCCCTTGGCGATGTTGGGAATGTGACGGTGGCCGTGCCCACGGTGGCAGCTTTCCCCAACACTTCCTCGACCAGCGTGCCCACGAGTCCGGAGGAGCACAGGCCTTTTGAGAAGGTGGTGAACAAGGAGTCGCTGGTCATCTCCGGCTTGCGACACTTCACGGGCTATCGCATCGAGCTGCAGGCTTGCAACCAGGACACCCCTGAGGAACGGTGCAGTGTGGCAGCCTACGTCAGTGCGAGGACCATGCCTGAAGCCAAGGCTGATGACATTGTTGGCCCTGTGACGCATGAAATCTTTGAGAACAACGTCGTCCACTTGATGTGGCAGGAGCCGAAGGAGCCCAATGGTCTGATCGTGCTGTATGAAGTGAGTTATCGGCGATATGGTGATGAGGAGCTGCATCTCTGCGTCTCCCGCAAGCACTTCGCTCTGGAACGGGGCTGCAGGCTGCGTGGGCTGTCACCGGGGAACTACAGCGTGCGAATCCGGGCCACCTCCCTTGCGGGCAACGGCTCTTGGACGGAACCCACCTATTTCTACGTGACAGACTATTTAGACGTCCCGTCAAATATTGCAAAAATTATCATCGGCCCCCTCATCTTTGTCTTTCTCTTCAGTGTTGTGATTGGAAGTATTTATCTATTCCTGAGAAAGAGGCAGCCAGATGGGCCGCTGGGACCGCTTTACGCTTCTTCAAACCCTGAGTATCTCAGTGCCAGTGATGTGTTTCCATGCTCTGTGTACGTGCCGGACGAGTGGGAGGTGTCTCGAGAGAAGATCACCCTCCTTCGAGAGCTGGGGCAGGGCTCCTTCGGCATGGTGTATGAGGGCAATGCCAGGGACATCATCAAGGGTGAGGCAGAGACCCGCGTGGCGGTGAAGACGGTCAACGAGTCAGCCAGTCTCCGAGAGCGGATTGAGTTCCTCAATGAGGCCTCGGTCATGAAGGGCTTCACCTGCCATCACGTGGTGCGCCTCCTGGGAGTGGTGTCCAAGGGCCAGCCCACGCTGGTGGTGATGGAGCTGATGGCTCACGGAGACCTGAAGAGCTACCTCCGTTCTCTGCGGCCAGAGGCTGAGAATAATCCTGGCCGCCCTCCCCCTACCCTTCAAGAGATGATTCAGATGGCGGCAGAGATTGCTGACGGGATGGCCTACCTGAACGCCAAGAAGTTTGTGCATCGGGACCTGGCAGCGAGAAACTGCATGGTCGCCCATGATTTTACTGTCAAAATTGGAGACTTTGGAATGACCAGAGACATCTATGAAACGGATTACTACCGGAAAGGGGGCAAGGGTCTGCTCCCTGTACGGTGGATGGCACCGGAGTCCCTGAAGGATGGGGTCTTCACCACTTCTTCTGACATGTGGTCCTTTGGCGTGGTCCTTTGGGAAATCACCAGCTTGGCAGAACAGCCTTACCAAGGCCTGTCTAATGAACAGGTGTTGAAATTTGTCATGGATGGAGGGTATCTGGATCAACCCGACAACTGTCCAGAGAGAGTCACTGACCTCATGCGCATGTGCTGGCAATTCAACCCCAAGATGAGGCCAACCTTCCTGGAGATTGTCAACCTGCTCAAGGACGACCTGCACCCCAGCTTTCCAGAGGTGTCGTTCTTCCACAGCGAGGAGAACAAGGCTCCCGAGAGTGAGGAGCTGGAGATGGAGTTTGAGGACATGGAGAATGTGCCCCTGGACCGTTCCTCGCACTGTCAGAGGGAGGAGGCGGGGGGCCGGGATGGAGGGTCCTCGCTGGGTTTCAAGCGGAGCTACGAGGAACACATCCCTTACACACACATGAACGGAGGCAAGAAAAACGGGCGGATTCTGACCTTGCCTCGGTCCAATCCTTCCTAACAGTGCCTACCGTGGCGGGGGCGGGCAGGGGTTCCCATTTTCGCTTTCCTCTGGTTTGAAAGCCTCTGGAAAACTCAGGATTCTCACGACTCTACCATGTCCAGTGGAGTTCAGAGATCGTTCCTATACATTTCTGTTCATCTTAAGGTGGACTCGTTTGGTTACCAATTTAACTAGTCCTGCAGAGGATTTAACTGTGAACCTGGAGGGCAAGGGGTTTCCACAGTTGCTGCTCCTTTGGGGCAACGACGGTTTCAAACCAGGATTTTGTGTTTTTTCGTTCCCCCCACCCGCCCCCAGCAGATGGAAAGAAAGCACCTGTTTTTACAAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGGTGTCTGAGCTTCAGTATAAAAGACAAAACTTCCTGTTTGTGGAACAAAATTTCGAAAGAAAAAACCAAA PRIMER_OPT_SIZE=23 PRIMER_MIN_SIZE=15 PRIMER_MAX_SIZE=26 PRIMER_MISPRIMING_LIBRARY=Human_rep_in_fasta.txt PRIMER_NUM_RETURN=20 PRIMER_NUM_NS_ACCEPTED=1 PRIMER_PRODUCT_SIZE_RANGE=100-999 PRIMER_EXPLAIN_FLAG=1 PRIMER_LEFT_EXPLAIN=considered 54638, GC content failed 1917, low tm 16142, high tm 25286, high any compl 4, high end compl 20, high repeat similarity 18, long poly-x seq 71, ok 11180 PRIMER_RIGHT_EXPLAIN=considered 54469, GC content failed 1671, low tm 16563, high tm 24803, high any compl 3, high end compl 3, high repeat similarity 10, long poly-x seq 104, ok 11312 PRIMER_PAIR_EXPLAIN=considered 639, unacceptable product size 582, high any compl 1, high end compl 5, ok 51 PRIMER_PAIR_PENALTY=0.0480 PRIMER_LEFT_PENALTY=0.042918 PRIMER_RIGHT_PENALTY=0.005048 PRIMER_LEFT_SEQUENCE=GTCATTCACAACAACAAGTGCAT PRIMER_RIGHT_SEQUENCE=GGTTCCTGAAACTTCTTCCATCT PRIMER_LEFT=1018,23 PRIMER_RIGHT=1530,23 PRIMER_LEFT_TM=59.957 PRIMER_RIGHT_TM=59.995 PRIMER_LEFT_GC_PERCENT=39.130 PRIMER_RIGHT_GC_PERCENT=43.478 PRIMER_LEFT_SELF_ANY=4.00 PRIMER_RIGHT_SELF_ANY=5.00 PRIMER_LEFT_SELF_END=2.00 PRIMER_RIGHT_SELF_END=0.00 PRIMER_LEFT_MISPRIMING_SCORE=12.00, MER21B a consensus PRIMER_RIGHT_MISPRIMING_SCORE=12.00, LTR12 LTR from human ERV9 endogenous retroviral sequence (HRES-1/1) PRIMER_PAIR_MISPRIMING_SCORE=22.00, L1MA9 3'-end of L1 repeat (subfamily L1MA9) - a consensus sequence PRIMER_LEFT_END_STABILITY=8.4000 PRIMER_RIGHT_END_STABILITY=6.6000 PRIMER_PAIR_COMPL_ANY=5.00 PRIMER_PAIR_COMPL_END=1.00 PRIMER_PRODUCT_SIZE=513 PRIMER_PAIR_PENALTY_1=0.0571 PRIMER_LEFT_1_PENALTY=0.011619 PRIMER_RIGHT_1_PENALTY=0.045432 PRIMER_LEFT_1_SEQUENCE=ACCAGAGACATCTATGAAACGGA PRIMER_RIGHT_1_SEQUENCE=GAACTCCACTGGACATGGTAGAG PRIMER_LEFT_1=3646,23 PRIMER_RIGHT_1=4366,23 PRIMER_LEFT_1_TM=60.012 PRIMER_RIGHT_1_TM=60.045 PRIMER_LEFT_1_GC_PERCENT=43.478 PRIMER_RIGHT_1_GC_PERCENT=52.174 PRIMER_LEFT_1_SELF_ANY=6.00 PRIMER_RIGHT_1_SELF_ANY=7.00 PRIMER_LEFT_1_SELF_END=0.00 PRIMER_RIGHT_1_SELF_END=2.00 PRIMER_LEFT_1_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_1_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_1_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_1_END_STABILITY=9.6000 PRIMER_RIGHT_1_END_STABILITY=5.7000 PRIMER_PAIR_1_COMPL_ANY=4.00 PRIMER_PAIR_1_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_1=721 PRIMER_PAIR_PENALTY_2=0.0571 PRIMER_LEFT_2_PENALTY=0.011619 PRIMER_RIGHT_2_PENALTY=0.045432 PRIMER_LEFT_2_SEQUENCE=GACCAGAGACATCTATGAAACGG PRIMER_RIGHT_2_SEQUENCE=GAACTCCACTGGACATGGTAGAG PRIMER_LEFT_2=3645,23 PRIMER_RIGHT_2=4366,23 PRIMER_LEFT_2_TM=60.012 PRIMER_RIGHT_2_TM=60.045 PRIMER_LEFT_2_GC_PERCENT=47.826 PRIMER_RIGHT_2_GC_PERCENT=52.174 PRIMER_LEFT_2_SELF_ANY=6.00 PRIMER_RIGHT_2_SELF_ANY=7.00 PRIMER_LEFT_2_SELF_END=1.00 PRIMER_RIGHT_2_SELF_END=2.00 PRIMER_LEFT_2_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_2_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_2_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_2_END_STABILITY=9.9000 PRIMER_RIGHT_2_END_STABILITY=5.7000 PRIMER_PAIR_2_COMPL_ANY=4.00 PRIMER_PAIR_2_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_2=722 PRIMER_PAIR_PENALTY_3=0.0613 PRIMER_LEFT_3_PENALTY=0.049672 PRIMER_RIGHT_3_PENALTY=0.011619 PRIMER_LEFT_3_SEQUENCE=CTGATCGTGCTGTATGAAGTGAG PRIMER_RIGHT_3_SEQUENCE=CCGTTTCATAGATGTCTCTGGTC PRIMER_LEFT_3=2743,23 PRIMER_RIGHT_3=3667,23 PRIMER_LEFT_3_TM=59.950 PRIMER_RIGHT_3_TM=60.012 PRIMER_LEFT_3_GC_PERCENT=47.826 PRIMER_RIGHT_3_GC_PERCENT=47.826 PRIMER_LEFT_3_SELF_ANY=4.00 PRIMER_RIGHT_3_SELF_ANY=6.00 PRIMER_LEFT_3_SELF_END=0.00 PRIMER_RIGHT_3_SELF_END=1.00 PRIMER_LEFT_3_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_3_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_3_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_3_END_STABILITY=6.4000 PRIMER_RIGHT_3_END_STABILITY=7.9000 PRIMER_PAIR_3_COMPL_ANY=6.00 PRIMER_PAIR_3_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_3=925 PRIMER_PAIR_PENALTY_4=0.0613 PRIMER_LEFT_4_PENALTY=0.049672 PRIMER_RIGHT_4_PENALTY=0.011619 PRIMER_LEFT_4_SEQUENCE=CTGATCGTGCTGTATGAAGTGAG PRIMER_RIGHT_4_SEQUENCE=TCCGTTTCATAGATGTCTCTGGT PRIMER_LEFT_4=2743,23 PRIMER_RIGHT_4=3668,23 PRIMER_LEFT_4_TM=59.950 PRIMER_RIGHT_4_TM=60.012 PRIMER_LEFT_4_GC_PERCENT=47.826 PRIMER_RIGHT_4_GC_PERCENT=43.478 PRIMER_LEFT_4_SELF_ANY=4.00 PRIMER_RIGHT_4_SELF_ANY=6.00 PRIMER_LEFT_4_SELF_END=0.00 PRIMER_RIGHT_4_SELF_END=2.00 PRIMER_LEFT_4_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_4_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_4_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_4_END_STABILITY=6.4000 PRIMER_RIGHT_4_END_STABILITY=7.9000 PRIMER_PAIR_4_COMPL_ANY=6.00 PRIMER_PAIR_4_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_4=926 PRIMER_PAIR_PENALTY_5=0.0711 PRIMER_LEFT_5_PENALTY=0.045432 PRIMER_RIGHT_5_PENALTY=0.025649 PRIMER_LEFT_5_SEQUENCE=CTCTACCATGTCCAGTGGAGTTC PRIMER_RIGHT_5_SEQUENCE=TTTTCTTTCGAAATTTTGTTCCA PRIMER_LEFT_5=4344,23 PRIMER_RIGHT_5=4683,23 PRIMER_LEFT_5_TM=60.045 PRIMER_RIGHT_5_TM=59.974 PRIMER_LEFT_5_GC_PERCENT=52.174 PRIMER_RIGHT_5_GC_PERCENT=26.087 PRIMER_LEFT_5_SELF_ANY=7.00 PRIMER_RIGHT_5_SELF_ANY=8.00 PRIMER_LEFT_5_SELF_END=3.00 PRIMER_RIGHT_5_SELF_END=1.00 PRIMER_LEFT_5_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_5_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_5_MISPRIMING_SCORE=21.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_5_END_STABILITY=6.4000 PRIMER_RIGHT_5_END_STABILITY=8.5000 PRIMER_PAIR_5_COMPL_ANY=4.00 PRIMER_PAIR_5_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_5=340 PRIMER_PAIR_PENALTY_6=0.0717 PRIMER_LEFT_6_PENALTY=0.066676 PRIMER_RIGHT_6_PENALTY=0.005048 PRIMER_LEFT_6_SEQUENCE=TCGTGTTGAACAAAGATGACAAC PRIMER_RIGHT_6_SEQUENCE=GGTTCCTGAAACTTCTTCCATCT PRIMER_LEFT_6=620,23 PRIMER_RIGHT_6=1530,23 PRIMER_LEFT_6_TM=60.067 PRIMER_RIGHT_6_TM=59.995 PRIMER_LEFT_6_GC_PERCENT=39.130 PRIMER_RIGHT_6_GC_PERCENT=43.478 PRIMER_LEFT_6_SELF_ANY=7.00 PRIMER_RIGHT_6_SELF_ANY=5.00 PRIMER_LEFT_6_SELF_END=3.00 PRIMER_RIGHT_6_SELF_END=0.00 PRIMER_LEFT_6_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_6_MISPRIMING_SCORE=12.00, LTR12 LTR from human ERV9 endogenous retroviral sequence (HRES-1/1) PRIMER_PAIR_6_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_6_END_STABILITY=6.4000 PRIMER_RIGHT_6_END_STABILITY=6.6000 PRIMER_PAIR_6_COMPL_ANY=5.00 PRIMER_PAIR_6_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_6=911 PRIMER_PAIR_PENALTY_7=0.0932 PRIMER_LEFT_7_PENALTY=0.081536 PRIMER_RIGHT_7_PENALTY=0.011619 PRIMER_LEFT_7_SEQUENCE=CCTTCAAGAGATGATTCAGATGG PRIMER_RIGHT_7_SEQUENCE=CCGTTTCATAGATGTCTCTGGTC PRIMER_LEFT_7=3501,23 PRIMER_RIGHT_7=3667,23 PRIMER_LEFT_7_TM=60.082 PRIMER_RIGHT_7_TM=60.012 PRIMER_LEFT_7_GC_PERCENT=43.478 PRIMER_RIGHT_7_GC_PERCENT=47.826 PRIMER_LEFT_7_SELF_ANY=5.00 PRIMER_RIGHT_7_SELF_ANY=6.00 PRIMER_LEFT_7_SELF_END=3.00 PRIMER_RIGHT_7_SELF_END=1.00 PRIMER_LEFT_7_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_7_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_7_MISPRIMING_SCORE=24.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_7_END_STABILITY=8.1000 PRIMER_RIGHT_7_END_STABILITY=7.9000 PRIMER_PAIR_7_COMPL_ANY=5.00 PRIMER_PAIR_7_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_7=167 PRIMER_PAIR_PENALTY_8=0.0932 PRIMER_LEFT_8_PENALTY=0.081536 PRIMER_RIGHT_8_PENALTY=0.011619 PRIMER_LEFT_8_SEQUENCE=CCTTCAAGAGATGATTCAGATGG PRIMER_RIGHT_8_SEQUENCE=TCCGTTTCATAGATGTCTCTGGT PRIMER_LEFT_8=3501,23 PRIMER_RIGHT_8=3668,23 PRIMER_LEFT_8_TM=60.082 PRIMER_RIGHT_8_TM=60.012 PRIMER_LEFT_8_GC_PERCENT=43.478 PRIMER_RIGHT_8_GC_PERCENT=43.478 PRIMER_LEFT_8_SELF_ANY=5.00 PRIMER_RIGHT_8_SELF_ANY=6.00 PRIMER_LEFT_8_SELF_END=3.00 PRIMER_RIGHT_8_SELF_END=2.00 PRIMER_LEFT_8_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_8_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_8_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_8_END_STABILITY=8.1000 PRIMER_RIGHT_8_END_STABILITY=7.9000 PRIMER_PAIR_8_COMPL_ANY=5.00 PRIMER_PAIR_8_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_8=168 PRIMER_PAIR_PENALTY_9=0.0978 PRIMER_LEFT_9_PENALTY=0.011619 PRIMER_RIGHT_9_PENALTY=0.086226 PRIMER_LEFT_9_SEQUENCE=ACCAGAGACATCTATGAAACGGA PRIMER_RIGHT_9_SEQUENCE=GGTAGGCACTGTTAGGAAGGATT PRIMER_LEFT_9=3646,23 PRIMER_RIGHT_9=4265,23 PRIMER_LEFT_9_TM=60.012 PRIMER_RIGHT_9_TM=59.914 PRIMER_LEFT_9_GC_PERCENT=43.478 PRIMER_RIGHT_9_GC_PERCENT=47.826 PRIMER_LEFT_9_SELF_ANY=6.00 PRIMER_RIGHT_9_SELF_ANY=3.00 PRIMER_LEFT_9_SELF_END=0.00 PRIMER_RIGHT_9_SELF_END=1.00 PRIMER_LEFT_9_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_9_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_9_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_9_END_STABILITY=9.6000 PRIMER_RIGHT_9_END_STABILITY=8.1000 PRIMER_PAIR_9_COMPL_ANY=3.00 PRIMER_PAIR_9_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_9=620 PRIMER_PAIR_PENALTY_10=0.0978 PRIMER_LEFT_10_PENALTY=0.011619 PRIMER_RIGHT_10_PENALTY=0.086226 PRIMER_LEFT_10_SEQUENCE=GACCAGAGACATCTATGAAACGG PRIMER_RIGHT_10_SEQUENCE=GGTAGGCACTGTTAGGAAGGATT PRIMER_LEFT_10=3645,23 PRIMER_RIGHT_10=4265,23 PRIMER_LEFT_10_TM=60.012 PRIMER_RIGHT_10_TM=59.914 PRIMER_LEFT_10_GC_PERCENT=47.826 PRIMER_RIGHT_10_GC_PERCENT=47.826 PRIMER_LEFT_10_SELF_ANY=6.00 PRIMER_RIGHT_10_SELF_ANY=3.00 PRIMER_LEFT_10_SELF_END=1.00 PRIMER_RIGHT_10_SELF_END=1.00 PRIMER_LEFT_10_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_10_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_10_MISPRIMING_SCORE=24.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_10_END_STABILITY=9.9000 PRIMER_RIGHT_10_END_STABILITY=8.1000 PRIMER_PAIR_10_COMPL_ANY=3.00 PRIMER_PAIR_10_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_10=621 PRIMER_PAIR_PENALTY_11=0.1056 PRIMER_LEFT_11_PENALTY=0.100593 PRIMER_RIGHT_11_PENALTY=0.005048 PRIMER_LEFT_11_SEQUENCE=GTTACGTCTGATTCGAGGAGAGA PRIMER_RIGHT_11_SEQUENCE=GGTTCCTGAAACTTCTTCCATCT PRIMER_LEFT_11=1338,23 PRIMER_RIGHT_11=1530,23 PRIMER_LEFT_11_TM=59.899 PRIMER_RIGHT_11_TM=59.995 PRIMER_LEFT_11_GC_PERCENT=47.826 PRIMER_RIGHT_11_GC_PERCENT=43.478 PRIMER_LEFT_11_SELF_ANY=4.00 PRIMER_RIGHT_11_SELF_ANY=5.00 PRIMER_LEFT_11_SELF_END=0.00 PRIMER_RIGHT_11_SELF_END=0.00 PRIMER_LEFT_11_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_11_MISPRIMING_SCORE=12.00, LTR12 LTR from human ERV9 endogenous retroviral sequence (HRES-1/1) PRIMER_PAIR_11_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_11_END_STABILITY=6.4000 PRIMER_RIGHT_11_END_STABILITY=6.6000 PRIMER_PAIR_11_COMPL_ANY=5.00 PRIMER_PAIR_11_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_11=193 PRIMER_PAIR_PENALTY_12=0.1056 PRIMER_LEFT_12_PENALTY=0.100593 PRIMER_RIGHT_12_PENALTY=0.005048 PRIMER_LEFT_12_SEQUENCE=TTACGTCTGATTCGAGGAGAGAC PRIMER_RIGHT_12_SEQUENCE=GGTTCCTGAAACTTCTTCCATCT PRIMER_LEFT_12=1339,23 PRIMER_RIGHT_12=1530,23 PRIMER_LEFT_12_TM=59.899 PRIMER_RIGHT_12_TM=59.995 PRIMER_LEFT_12_GC_PERCENT=47.826 PRIMER_RIGHT_12_GC_PERCENT=43.478 PRIMER_LEFT_12_SELF_ANY=4.00 PRIMER_RIGHT_12_SELF_ANY=5.00 PRIMER_LEFT_12_SELF_END=2.00 PRIMER_RIGHT_12_SELF_END=0.00 PRIMER_LEFT_12_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_12_MISPRIMING_SCORE=12.00, LTR12 LTR from human ERV9 endogenous retroviral sequence (HRES-1/1) PRIMER_PAIR_12_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_12_END_STABILITY=6.1000 PRIMER_RIGHT_12_END_STABILITY=6.6000 PRIMER_PAIR_12_COMPL_ANY=5.00 PRIMER_PAIR_12_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_12=192 PRIMER_PAIR_PENALTY_13=0.1096 PRIMER_LEFT_13_PENALTY=0.066676 PRIMER_RIGHT_13_PENALTY=0.042918 PRIMER_LEFT_13_SEQUENCE=GTGTTGAACAAAGATGACAACGA PRIMER_RIGHT_13_SEQUENCE=ATGCACTTGTTGTTGTGAATGAC PRIMER_LEFT_13=622,23 PRIMER_RIGHT_13=1040,23 PRIMER_LEFT_13_TM=60.067 PRIMER_RIGHT_13_TM=59.957 PRIMER_LEFT_13_GC_PERCENT=39.130 PRIMER_RIGHT_13_GC_PERCENT=39.130 PRIMER_LEFT_13_SELF_ANY=7.00 PRIMER_RIGHT_13_SELF_ANY=4.00 PRIMER_LEFT_13_SELF_END=0.00 PRIMER_RIGHT_13_SELF_END=3.00 PRIMER_LEFT_13_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_13_MISPRIMING_SCORE=12.00, L1MA5 3'-end of L1 repeat (subfamily L1MA5) - a consensus sequence PRIMER_PAIR_13_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_13_END_STABILITY=8.4000 PRIMER_RIGHT_13_END_STABILITY=6.3000 PRIMER_PAIR_13_COMPL_ANY=5.00 PRIMER_PAIR_13_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_13=419 PRIMER_PAIR_PENALTY_14=0.1096 PRIMER_LEFT_14_PENALTY=0.066676 PRIMER_RIGHT_14_PENALTY=0.042918 PRIMER_LEFT_14_SEQUENCE=TCGTGTTGAACAAAGATGACAAC PRIMER_RIGHT_14_SEQUENCE=ATGCACTTGTTGTTGTGAATGAC PRIMER_LEFT_14=620,23 PRIMER_RIGHT_14=1040,23 PRIMER_LEFT_14_TM=60.067 PRIMER_RIGHT_14_TM=59.957 PRIMER_LEFT_14_GC_PERCENT=39.130 PRIMER_RIGHT_14_GC_PERCENT=39.130 PRIMER_LEFT_14_SELF_ANY=7.00 PRIMER_RIGHT_14_SELF_ANY=4.00 PRIMER_LEFT_14_SELF_END=3.00 PRIMER_RIGHT_14_SELF_END=3.00 PRIMER_LEFT_14_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_14_MISPRIMING_SCORE=12.00, L1MA5 3'-end of L1 repeat (subfamily L1MA5) - a consensus sequence PRIMER_PAIR_14_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_14_END_STABILITY=6.4000 PRIMER_RIGHT_14_END_STABILITY=6.3000 PRIMER_PAIR_14_COMPL_ANY=5.00 PRIMER_PAIR_14_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_14=421 PRIMER_PAIR_PENALTY_15=0.1108 PRIMER_LEFT_15_PENALTY=0.045432 PRIMER_RIGHT_15_PENALTY=0.065377 PRIMER_LEFT_15_SEQUENCE=CTCTACCATGTCCAGTGGAGTTC PRIMER_RIGHT_15_SEQUENCE=TTGTTCCACAAACAGGAAGTTTT PRIMER_LEFT_15=4344,23 PRIMER_RIGHT_15=4668,23 PRIMER_LEFT_15_TM=60.045 PRIMER_RIGHT_15_TM=59.935 PRIMER_LEFT_15_GC_PERCENT=52.174 PRIMER_RIGHT_15_GC_PERCENT=34.783 PRIMER_LEFT_15_SELF_ANY=7.00 PRIMER_RIGHT_15_SELF_ANY=5.00 PRIMER_LEFT_15_SELF_END=3.00 PRIMER_RIGHT_15_SELF_END=1.00 PRIMER_LEFT_15_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_15_MISPRIMING_SCORE=12.00, MER11A a consensus PRIMER_PAIR_15_MISPRIMING_SCORE=19.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_LEFT_15_END_STABILITY=6.4000 PRIMER_RIGHT_15_END_STABILITY=7.0000 PRIMER_PAIR_15_COMPL_ANY=5.00 PRIMER_PAIR_15_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_15=325 PRIMER_PAIR_PENALTY_16=0.1108 PRIMER_LEFT_16_PENALTY=0.045432 PRIMER_RIGHT_16_PENALTY=0.065377 PRIMER_LEFT_16_SEQUENCE=CTCTACCATGTCCAGTGGAGTTC PRIMER_RIGHT_16_SEQUENCE=TTTGTTCCACAAACAGGAAGTTT PRIMER_LEFT_16=4344,23 PRIMER_RIGHT_16=4669,23 PRIMER_LEFT_16_TM=60.045 PRIMER_RIGHT_16_TM=59.935 PRIMER_LEFT_16_GC_PERCENT=52.174 PRIMER_RIGHT_16_GC_PERCENT=34.783 PRIMER_LEFT_16_SELF_ANY=7.00 PRIMER_RIGHT_16_SELF_ANY=7.00 PRIMER_LEFT_16_SELF_END=3.00 PRIMER_RIGHT_16_SELF_END=3.00 PRIMER_LEFT_16_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_16_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_16_MISPRIMING_SCORE=21.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_16_END_STABILITY=6.4000 PRIMER_RIGHT_16_END_STABILITY=6.7000 PRIMER_PAIR_16_COMPL_ANY=5.00 PRIMER_PAIR_16_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_16=326 PRIMER_PAIR_PENALTY_17=0.1108 PRIMER_LEFT_17_PENALTY=0.045432 PRIMER_RIGHT_17_PENALTY=0.065377 PRIMER_LEFT_17_SEQUENCE=CTCTACCATGTCCAGTGGAGTTC PRIMER_RIGHT_17_SEQUENCE=TTTTGTTCCACAAACAGGAAGTT PRIMER_LEFT_17=4344,23 PRIMER_RIGHT_17=4670,23 PRIMER_LEFT_17_TM=60.045 PRIMER_RIGHT_17_TM=59.935 PRIMER_LEFT_17_GC_PERCENT=52.174 PRIMER_RIGHT_17_GC_PERCENT=34.783 PRIMER_LEFT_17_SELF_ANY=7.00 PRIMER_RIGHT_17_SELF_ANY=7.00 PRIMER_LEFT_17_SELF_END=3.00 PRIMER_RIGHT_17_SELF_END=3.00 PRIMER_LEFT_17_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_17_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_17_MISPRIMING_SCORE=21.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_17_END_STABILITY=6.4000 PRIMER_RIGHT_17_END_STABILITY=6.7000 PRIMER_PAIR_17_COMPL_ANY=5.00 PRIMER_PAIR_17_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_17=327 PRIMER_PAIR_PENALTY_18=0.1119 PRIMER_LEFT_18_PENALTY=0.086226 PRIMER_RIGHT_18_PENALTY=0.025649 PRIMER_LEFT_18_SEQUENCE=AATCCTTCCTAACAGTGCCTACC PRIMER_RIGHT_18_SEQUENCE=TTTTCTTTCGAAATTTTGTTCCA PRIMER_LEFT_18=4243,23 PRIMER_RIGHT_18=4683,23 PRIMER_LEFT_18_TM=59.914 PRIMER_RIGHT_18_TM=59.974 PRIMER_LEFT_18_GC_PERCENT=47.826 PRIMER_RIGHT_18_GC_PERCENT=26.087 PRIMER_LEFT_18_SELF_ANY=3.00 PRIMER_RIGHT_18_SELF_ANY=8.00 PRIMER_LEFT_18_SELF_END=0.00 PRIMER_RIGHT_18_SELF_END=1.00 PRIMER_LEFT_18_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_18_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_18_MISPRIMING_SCORE=21.00, MER25 Older LINE1 5' end region - a consensus PRIMER_LEFT_18_END_STABILITY=6.9000 PRIMER_RIGHT_18_END_STABILITY=8.5000 PRIMER_PAIR_18_COMPL_ANY=4.00 PRIMER_PAIR_18_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_18=441 PRIMER_PAIR_PENALTY_19=0.1170 PRIMER_LEFT_19_PENALTY=0.111908 PRIMER_RIGHT_19_PENALTY=0.005048 PRIMER_LEFT_19_SEQUENCE=CTTGGAAATTGGGAACTACTCCT PRIMER_RIGHT_19_SEQUENCE=GGTTCCTGAAACTTCTTCCATCT PRIMER_LEFT_19=1362,23 PRIMER_RIGHT_19=1530,23 PRIMER_LEFT_19_TM=59.888 PRIMER_RIGHT_19_TM=59.995 PRIMER_LEFT_19_GC_PERCENT=43.478 PRIMER_RIGHT_19_GC_PERCENT=43.478 PRIMER_LEFT_19_SELF_ANY=4.00 PRIMER_RIGHT_19_SELF_ANY=5.00 PRIMER_LEFT_19_SELF_END=0.00 PRIMER_RIGHT_19_SELF_END=0.00 PRIMER_LEFT_19_MISPRIMING_SCORE=12.00, reverse Tigger1 Autonomous DNA transposon PRIMER_RIGHT_19_MISPRIMING_SCORE=12.00, LTR12 LTR from human ERV9 endogenous retroviral sequence (HRES-1/1) PRIMER_PAIR_19_MISPRIMING_SCORE=21.00, L1MD1 3'-end of L1 repeat (subfamily L1MD1) - a consensus sequence PRIMER_LEFT_19_END_STABILITY=7.9000 PRIMER_RIGHT_19_END_STABILITY=6.6000 PRIMER_PAIR_19_COMPL_ANY=5.00 PRIMER_PAIR_19_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_19=169 =