PRIMER_SEQUENCE_ID=NM_002019 SEQUENCE=GCGGACACTCCTCTCGGCTCCTCCCCGGCAGCGGCGGCGGCTCGGAGCGGGCTCCGGGGCTCGGGTGCAGCGGCCAGCGGGCCTGGCGGCGAGGATTACCCGGGGAAGTGGTTGTCTCCTGGCTGGAGCCGCGAGACGGGCGCTCAGGGCGCGGGGCCGGCGGCGGCGAACGAGAGGACGGACTCTGGCGGCCGGGTCGTTGGCCGGGGGAGCGCGGGCACCGGGCGAGCAGGCCGCGTCGCGCTCACCATGGTCAGCTACTGGGACACCGGGGTCCTGCTGTGCGCGCTGCTCAGCTGTCTGCTTCTCACAGGATCTAGTTCAGGTTCAAAATTAAAAGATCCTGAACTGAGTTTAAAAGGCACCCAGCACATCATGCAAGCAGGCCAGACACTGCATCTCCAATGCAGGGGGGAAGCAGCCCATAAATGGTCTTTGCCTGAAATGGTGAGTAAGGAAAGCGAAAGGCTGAGCATAACTAAATCTGCCTGTGGAAGAAATGGCAAACAATTCTGCAGTACTTTAACCTTGAACACAGCTCAAGCAAACCACACTGGCTTCTACAGCTGCAAATATCTAGCTGTACCTACTTCAAAGAAGAAGGAAACAGAATCTGCAATCTATATATTTATTAGTGATACAGGTAGACCTTTCGTAGAGATGTACAGTGAAATCCCCGAAATTATACACATGACTGAAGGAAGGGAGCTCGTCATTCCCTGCCGGGTTACGTCACCTAACATCACTGTTACTTTAAAAAAGTTTCCACTTGACACTTTGATCCCTGATGGAAAACGCATAATCTGGGACAGTAGAAAGGGCTTCATCATATCAAATGCAACGTACAAAGAAATAGGGCTTCTGACCTGTGAAGCAACAGTCAATGGGCATTTGTATAAGACAAACTATCTCACACATCGACAAACCAATACAATCATAGATGTCCAAATAAGCACACCACGCCCAGTCAAATTACTTAGAGGCCATACTCTTGTCCTCAATTGTACTGCTACCACTCCCTTGAACACGAGAGTTCAAATGACCTGGAGTTACCCTGATGAAAAAAATAAGAGAGCTTCCGTAAGGCGACGAATTGACCAAAGCAATTCCCATGCCAACATATTCTACAGTGTTCTTACTATTGACAAAATGCAGAACAAAGACAAAGGACTTTATACTTGTCGTGTAAGGAGTGGACCATCATTCAAATCTGTTAACACCTCAGTGCATATATATGATAAAGCATTCATCACTGTGAAACATCGAAAACAGCAGGTGCTTGAAACCGTAGCTGGCAAGCGGTCTTACCGGCTCTCTATGAAAGTGAAGGCATTTCCCTCGCCGGAAGTTGTATGGTTAAAAGATGGGTTACCTGCGACTGAGAAATCTGCTCGCTATTTGACTCGTGGCTACTCGTTAATTATCAAGGACGTAACTGAAGAGGATGCAGGGAATTATACAATCTTGCTGAGCATAAAACAGTCAAATGTGTTTAAAAACCTCACTGCCACTCTAATTGTCAATGTGAAACCCCAGATTTACGAAAAGGCCGTGTCATCGTTTCCAGACCCGGCTCTCTACCCACTGGGCAGCAGACAAATCCTGACTTGTACCGCATATGGTATCCCTCAACCTACAATCAAGTGGTTCTGGCACCCCTGTAACCATAATCATTCCGAAGCAAGGTGTGACTTTTGTTCCAATAATGAAGAGTCCTTTATCCTGGATGCTGACAGCAACATGGGAAACAGAATTGAGAGCATCACTCAGCGCATGGCAATAATAGAAGGAAAGAATAAGATGGCTAGCACCTTGGTTGTGGCTGACTCTAGAATTTCTGGAATCTACATTTGCATAGCTTCCAATAAAGTTGGGACTGTGGGAAGAAACATAAGCTTTTATATCACAGATGTGCCAAATGGGTTTCATGTTAACTTGGAAAAAATGCCGACGGAAGGAGAGGACCTGAAACTGTCTTGCACAGTTAACAAGTTCTTATACAGAGACGTTACTTGGATTTTACTGCGGACAGTTAATAACAGAACAATGCACTACAGTATTAGCAAGCAAAAAATGGCCATCACTAAGGAGCACTCCATCACTCTTAATCTTACCATCATGAATGTTTCCCTGCAAGATTCAGGCACCTATGCCTGCAGAGCCAGGAATGTATACACAGGGGAAGAAATCCTCCAGAAGAAAGAAATTACAATCAGAGATCAGGAAGCACCATACCTCCTGCGAAACCTCAGTGATCACACAGTGGCCATCAGCAGTTCCACCACTTTAGACTGTCATGCTAATGGTGTCCCCGAGCCTCAGATCACTTGGTTTAAAAACAACCACAAAATACAACAAGAGCCTGGAATTATTTTAGGACCAGGAAGCAGCACGCTGTTTATTGAAAGAGTCACAGAAGAGGATGAAGGTGTCTATCACTGCAAAGCCACCAACCAGAAGGGCTCTGTGGAAAGTTCAGCATACCTCACTGTTCAAGGAACCTCGGACAAGTCTAATCTGGAGCTGATCACTCTAACATGCACCTGTGTGGCTGCGACTCTCTTCTGGCTCCTATTAACCCTCCTTATCCGAAAAATGAAAAGGTCTTCTTCTGAAATAAAGACTGACTACCTATCAATTATAATGGACCCAGATGAAGTTCCTTTGGATGAGCAGTGTGAGCGGCTCCCTTATGATGCCAGCAAGTGGGAGTTTGCCCGGGAGAGACTTAAACTGGGCAAATCACTTGGAAGAGGGGCTTTTGGAAAAGTGGTTCAAGCATCAGCATTTGGCATTAAGAAATCACCTACGTGCCGGACTGTGGCTGTGAAAATGCTGAAAGAGGGGGCCACGGCCAGCGAGTACAAAGCTCTGATGACTGAGCTAAAAATCTTGACCCACATTGGCCACCATCTGAACGTGGTTAACCTGCTGGGAGCCTGCACCAAGCAAGGAGGGCCTCTGATGGTGATTGTTGAATACTGCAAATATGGAAATCTCTCCAACTACCTCAAGAGCAAACGTGACTTATTTTTTCTCAACAAGGATGCAGCACTACACATGGAGCCTAAGAAAGAAAAAATGGAGCCAGGCCTGGAACAAGGCAAGAAACCAAGACTAGATAGCGTCACCAGCAGCGAAAGCTTTGCGAGCTCCGGCTTTCAGGAAGATAAAAGTCTGAGTGATGTTGAGGAAGAGGAGGATTCTGACGGTTTCTACAAGGAGCCCATCACTATGGAAGATCTGATTTCTTACAGTTTTCAAGTGGCCAGAGGCATGGAGTTCCTGTCTTCCAGAAAGTGCATTCATCGGGACCTGGCAGCGAGAAACATTCTTTTATCTGAGAACAACGTGGTGAAGATTTGTGATTTTGGCCTTGCCCGGGATATTTATAAGAACCCCGATTATGTGAGAAAAGGAGATACTCGACTTCCTCTGAAATGGATGGCTCCCGAATCTATCTTTGACAAAATCTACAGCACCAAGAGCGACGTGTGGTCTTACGGAGTATTGCTGTGGGAAATCTTCTCCTTAGGTGGGTCTCCATACCCAGGAGTACAAATGGATGAGGACTTTTGCAGTCGCCTGAGGGAAGGCATGAGGATGAGAGCTCCTGAGTACTCTACTCCTGAAATCTATCAGATCATGCTGGACTGCTGGCACAGAGACCCAAAAGAAAGGCCAAGATTTGCAGAACTTGTGGAAAAACTAGGTGATTTGCTTCAAGCAAATGTACAACAGGATGGTAAAGACTACATCCCAATCAATGCCATACTGACAGGAAATAGTGGGTTTACATACTCAACTCCTGCCTTCTCTGAGGACTTCTTCAAGGAAAGTATTTCAGCTCCGAAGTTTAATTCAGGAAGCTCTGATGATGTCAGATATGTAAATGCTTTCAAGTTCATGAGCCTGGAAAGAATCAAAACCTTTGAAGAACTTTTACCGAATGCCACCTCCATGTTTGATGACTACCAGGGCGACAGCAGCACTCTGTTGGCCTCTCCCATGCTGAAGCGCTTCACCTGGACTGACAGCAAACCCAAGGCCTCGCTCAAGATTGACTTGAGAGTAACCAGTAAAAGTAAGGAGTCGGGGCTGTCTGATGTCAGCAGGCCCAGTTTCTGCCATTCCAGCTGTGGGCACGTCAGCGAAGGCAAGCGCAGGTTCACCTACGACCACGCTGAGCTGGAAAGGAAAATCGCGTGCTGCTCCCCGCCCCCAGACTACAACTCGGTGGTCCTGTACTCCACCCCACCCATCTAGAGTTTGACACGAAGCCTTATTTCTAGAAGCACATGTGTATTTATACCCCCAGGAAACTAGCTTTTGCCAGTATTATGCATATATAAGTTTACACCTTTATCTTTCCATGGGAGCCAGCTGCTTTTTGTGATTTTTTTAATAGTGCTTTTTTTTTTTGACTAACAAGAATGTAACTCCAGATAGAGAAATAGTGACAAGTGAAGAACACTACTGCTAAATCCTCATGTTACTCAGTGTTAGAGAAATCCTTCCTAAACCCAATGACTTCCCTGCTCCAACCCCCGCCACCTCAGGGCACGCAGGACCAGTTTGATTGAGGAGCTGCACTGATCACCCAATGCATCACGTACCCCACTGGGCCAGCCCTGCAGCCCAAAACCCAGGGCAACAAGCCCGTTAGCCCCAGGGGATCACTGGCTGGCCTGAGCAACATCTCGGGAGTCCTCTAGCAGGCCTAAGACATGTGAGGAGGAAAAGGAAAAAAAGCAAAAAGCAAGGGAGAAAAGAGAAACCGGGAGAAGGCATGAGAAAGAATTTGAGACGCACCATGTGGGCACGGAGGGGGACGGGGCTCAGCAATGCCATTTCAGTGGCTTCCCAGCTCTGACCCTTCTACATTTGAGGGCCCAGCCAGGAGCAGATGGACAGCGATGAGGGGACATTTTCTGGATTCTGGGAGGCAAGAAAAGGACAAATATCTTTTTTGGAACTAAAGCAAATTTTAGACCTTTACCTATGGAAGTGGTTCTATGTCCATTCTCATTCGTGGCATGTTTTGATTTGTAGCACTGAGGGTGGCACTCAACTCTGAGCCCATACTTTTGGCTCCTCTAGTAAGATGCACTGAAAACTTAGCCAGAGTTAGGTTGTCTCCAGGCCATGATGGCCTTACACTGAAAATGTCACATTCTATTTTGGGTATTAATATATAGTCCAGACACTTAACTCAATTTCTTGGTATTATTCTGTTTTGCACAGTTAGTTGTGAAAGAAAGCTGAGAAGAATGAAAATGCAGTCCTGAGGAGAGTTTTCTCCATATCAAAACGAGGGCTGATGGAGGAAAAAGGTCAATAAGGTCAAGGGAAGACCCCGTCTCTATACCAACCAAACCAATTCACCAACACAGTTGGGACCCAAAACACAGGAAGTCAGTCACGTTTCCTTTTCATTTAATGGGGATTCCACTATCTCACACTAATCTGAAAGGATGTGGAAGAGCATTAGCTGGCGCATATTAAGCACTTTAAGCTCCTTGAGTAAAAAGGTGGTATGTAATTTATGCAAGGTATTTCTCCAGTTGGGACTCAGGATATTAGTTAATGAGCCATCACTAGAAGAAAAGCCCATTTTCAACTGCTTTGAAACTTGCCTGGGGTCTGAGCATGATGGGAATAGGGAGACAGGGTAGGAAAGGGCGCCTACTCTTCAGGGTCTAAAGATCAAGTGGGCCTTGGATCGCTAAGCTGGCTCTGTTTGATGCTATTTATGCAAGTTAGGGTCTATGTATTTAGGATGCGCCTACTCTTCAGGGTCTAAAGATCAAGTGGGCCTTGGATCGCTAAGCTGGCTCTGTTTGATGCTATTTATGCAAGTTAGGGTCTATGTATTTAGGATGTCTGCACCTTCTGCAGCCAGTCAGAAGCTGGAGAGGCAACAGTGGATTGCTGCTTCTTGGGGAGAAGAGTATGCTTCCTTTTATCCATGTAATTTAACTGTAGAACCTGAGCTCTAAGTAACCGAAGAATGTATGCCTCTGTTCTTATGTGCCACATCCTTGTTTAAAGGCTCTCTGTATGAAGAGATGGGACCGTCATCAGCACATTCCCTAGTGAGCCTACTGGCTCCTGGCAGCGGCTTTTGTGGAAGACTCACTAGCCAGAAGAGAGGAGTGGGACAGTCCTCTCCACCAAGATCTAAATCCAAACAAAAGCAGGCTAGAGCCAGAAGAGAGGACAAATCTTTGTTGTTCCTCTTCTTTACACATACGCAAACCACCTGTGACAGCTGGCAATTTTATAAATCAGGTAACTGGAAGGAGGTTAAACTCAGAAAAAAGAAGACCTCAGTCAATTCTCTACTTTTTTTTTTTTTTTTCCAAATCAGATAATAGCCCAGCAAATAGTGATAACAAATAAAACCTTAGCTGTTCATGTCTTGATTTCAATAATTAATTCTTAATCATTAAGAGACCATAATAAATACTCCTTTTCAAGAGAAAAGCAAAACCATTAGAATTGTTACTCAGCTCCTTCAAACTCAGGTTTGTAGCATACATGAGTCCATCCATCAGTCAAAGAATGGTTCCATCTGGAGTCTTAATGTAGAAAGAAAAATGGAGACTTGTAATAATGAGCTAGTTACAAAGTGCTTGTTCATTAAAATAGCACTGAAAATTGAAACATGAATTAACTGATAATATTCCAATCATTTGCCATTTATGACAAAAATGGTTGGCACTAACAAAGAACGAGCACTTCCTTTCAGAGTTTCTGAGATAATGTACGTGGAACAGTCTGGGTGGAATGGGGCTGAAACCATGTGCAAGTCTGTGTCTTGTCAGTCCAAGAAGTGACACCGAGATGTTAATTTTAGGGACCCGTGCCTTGTTTCCTAGCCCACAAGAATGCAAACATCAAACAGATACTCGCTAGCCTCATTTAAATTGATTAAAGGAGGAGTGCATCTTTGGCCGACAGTGGTGTAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGTGGGTGTATGTGTGTTTTGTGCATAACTATTTAAGGAAACTGGAATTTTAAAGTTACTTTTATACAAACCAAGAATATATGCTACAGATATAAGACAGACATGGTTTGGTCCTATATTTCTAGTCATGATGAATGTATTTTGTATACCATCTTCATATAATATACTTAAAAATATTTCTTAATTGGGATTTGTAATCGTACCAACTTAATTGATAAACTTGGCAACTGCTTTTATGTTCTGTCTCCTTCCATAAATTTTTCAAAATACTAATTCAACAAAGAAAAAGCTCTTTTTTTTCCTAAAATAAACTCAAATTTATCCTTGTTTAGAGCAGAGAAAAATTAAGAAAAACTTTGAAATGGTCTCAAAAAATTGCTAAATATTTTCAATGGAAAACTAAATGTTAGTTTAGCTGATTGTATGGGGTTTTCGAACCTTTCACTTTTTGTTTGTTTTACCTATTTCACAACTGTGTAAATTGCCAATAATTCCTGTCCATGAAAATGCAAATTATCCAGTGTAGATATATTTGACCATCACCCTATGGATATTGGCTAGTTTTGCCTTTATTAAGCAAATTCATTTCAGCCTGAATGTCTGCCTATATATTCTCTGCTCTTTGTATTCTCCTTTGAACCCGTTAAAACATCCTGTGGCACTC PRIMER_OPT_SIZE=23 PRIMER_MIN_SIZE=15 PRIMER_MAX_SIZE=26 PRIMER_MISPRIMING_LIBRARY=Human_rep_in_fasta.txt PRIMER_NUM_RETURN=20 PRIMER_NUM_NS_ACCEPTED=1 PRIMER_PRODUCT_SIZE_RANGE=100-999 PRIMER_EXPLAIN_FLAG=1 PRIMER_LEFT_EXPLAIN=considered 88619, GC content failed 3520, low tm 45066, high tm 20678, high any compl 9, high end compl 44, high repeat similarity 44, long poly-x seq 311, ok 18947 PRIMER_RIGHT_EXPLAIN=considered 88607, GC content failed 2835, low tm 45647, high tm 20566, high end compl 6, high repeat similarity 9, long poly-x seq 311, ok 19233 PRIMER_PAIR_EXPLAIN=considered 1539, unacceptable product size 1470, high end compl 3, ok 66 PRIMER_PAIR_PENALTY=0.0051 PRIMER_LEFT_PENALTY=0.001908 PRIMER_RIGHT_PENALTY=0.003218 PRIMER_LEFT_SEQUENCE=GCACTAACAAAGAACGAGCACTT PRIMER_RIGHT_SEQUENCE=GTTGGTACGATTACAAATCCCAA PRIMER_LEFT=6720,23 PRIMER_RIGHT=7222,23 PRIMER_LEFT_TM=60.002 PRIMER_RIGHT_TM=59.997 PRIMER_LEFT_GC_PERCENT=43.478 PRIMER_RIGHT_GC_PERCENT=39.130 PRIMER_LEFT_SELF_ANY=3.00 PRIMER_RIGHT_SELF_ANY=5.00 PRIMER_LEFT_SELF_END=2.00 PRIMER_RIGHT_SELF_END=2.00 PRIMER_LEFT_MISPRIMING_SCORE=11.00, L1MA2 3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence PRIMER_RIGHT_MISPRIMING_SCORE=11.00, MER25 Older LINE1 5' end region - a consensus PRIMER_PAIR_MISPRIMING_SCORE=21.00, MARINER1 Human mariner PRIMER_LEFT_END_STABILITY=6.7000 PRIMER_RIGHT_END_STABILITY=10.0000 PRIMER_PAIR_COMPL_ANY=4.00 PRIMER_PAIR_COMPL_END=2.00 PRIMER_PRODUCT_SIZE=503 PRIMER_PAIR_PENALTY_1=0.0204 PRIMER_LEFT_1_PENALTY=0.015214 PRIMER_RIGHT_1_PENALTY=0.005175 PRIMER_LEFT_1_SEQUENCE=GGAACCTCGGACAAGTCTAATCT PRIMER_RIGHT_1_SEQUENCE=AAGAAGACCTTTTCATTTTTCGG PRIMER_LEFT_1=2496,23 PRIMER_RIGHT_1=2610,23 PRIMER_LEFT_1_TM=60.015 PRIMER_RIGHT_1_TM=59.995 PRIMER_LEFT_1_GC_PERCENT=47.826 PRIMER_RIGHT_1_GC_PERCENT=34.783 PRIMER_LEFT_1_SELF_ANY=4.00 PRIMER_RIGHT_1_SELF_ANY=4.00 PRIMER_LEFT_1_SELF_END=2.00 PRIMER_RIGHT_1_SELF_END=1.00 PRIMER_LEFT_1_MISPRIMING_SCORE=10.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_1_MISPRIMING_SCORE=11.00, MER42c MER42 repetitive sequence: subfamily MER42c - a consensus PRIMER_PAIR_1_MISPRIMING_SCORE=20.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_1_END_STABILITY=6.6000 PRIMER_RIGHT_1_END_STABILITY=10.2000 PRIMER_PAIR_1_COMPL_ANY=5.00 PRIMER_PAIR_1_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_1=115 PRIMER_PAIR_PENALTY_2=0.0204 PRIMER_LEFT_2_PENALTY=0.015214 PRIMER_RIGHT_2_PENALTY=0.005175 PRIMER_LEFT_2_SEQUENCE=AGGAACCTCGGACAAGTCTAATC PRIMER_RIGHT_2_SEQUENCE=AAGAAGACCTTTTCATTTTTCGG PRIMER_LEFT_2=2495,23 PRIMER_RIGHT_2=2610,23 PRIMER_LEFT_2_TM=60.015 PRIMER_RIGHT_2_TM=59.995 PRIMER_LEFT_2_GC_PERCENT=47.826 PRIMER_RIGHT_2_GC_PERCENT=34.783 PRIMER_LEFT_2_SELF_ANY=4.00 PRIMER_RIGHT_2_SELF_ANY=4.00 PRIMER_LEFT_2_SELF_END=3.00 PRIMER_RIGHT_2_SELF_END=1.00 PRIMER_LEFT_2_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_2_MISPRIMING_SCORE=11.00, MER42c MER42 repetitive sequence: subfamily MER42c - a consensus PRIMER_PAIR_2_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_2_END_STABILITY=5.9000 PRIMER_RIGHT_2_END_STABILITY=10.2000 PRIMER_PAIR_2_COMPL_ANY=5.00 PRIMER_PAIR_2_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_2=116 PRIMER_PAIR_PENALTY_3=0.0328 PRIMER_LEFT_3_PENALTY=0.015214 PRIMER_RIGHT_3_PENALTY=0.017590 PRIMER_LEFT_3_SEQUENCE=AGGAACCTCGGACAAGTCTAATC PRIMER_RIGHT_3_SEQUENCE=ATTTGCCCAGTTTAAGTCTCTCC PRIMER_LEFT_3=2495,23 PRIMER_RIGHT_3=2742,23 PRIMER_LEFT_3_TM=60.015 PRIMER_RIGHT_3_TM=60.018 PRIMER_LEFT_3_GC_PERCENT=47.826 PRIMER_RIGHT_3_GC_PERCENT=43.478 PRIMER_LEFT_3_SELF_ANY=4.00 PRIMER_RIGHT_3_SELF_ANY=4.00 PRIMER_LEFT_3_SELF_END=3.00 PRIMER_RIGHT_3_SELF_END=0.00 PRIMER_LEFT_3_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_3_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_3_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_3_END_STABILITY=5.9000 PRIMER_RIGHT_3_END_STABILITY=7.9000 PRIMER_PAIR_3_COMPL_ANY=5.00 PRIMER_PAIR_3_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_3=248 PRIMER_PAIR_PENALTY_4=0.0569 PRIMER_LEFT_4_PENALTY=0.001908 PRIMER_RIGHT_4_PENALTY=0.054994 PRIMER_LEFT_4_SEQUENCE=GCACTAACAAAGAACGAGCACTT PRIMER_RIGHT_4_SEQUENCE=GAGGCTAGCGAGTATCTGTTTGA PRIMER_LEFT_4=6720,23 PRIMER_RIGHT_4=6921,23 PRIMER_LEFT_4_TM=60.002 PRIMER_RIGHT_4_TM=60.055 PRIMER_LEFT_4_GC_PERCENT=43.478 PRIMER_RIGHT_4_GC_PERCENT=47.826 PRIMER_LEFT_4_SELF_ANY=3.00 PRIMER_RIGHT_4_SELF_ANY=6.00 PRIMER_LEFT_4_SELF_END=2.00 PRIMER_RIGHT_4_SELF_END=1.00 PRIMER_LEFT_4_MISPRIMING_SCORE=11.00, L1MA2 3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence PRIMER_RIGHT_4_MISPRIMING_SCORE=11.00, L1MA10 3'-end of L1 repeat (subfamily L1MA10) - a consensus sequence PRIMER_PAIR_4_MISPRIMING_SCORE=21.00, L1MA2 3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence PRIMER_LEFT_4_END_STABILITY=6.7000 PRIMER_RIGHT_4_END_STABILITY=7.3000 PRIMER_PAIR_4_COMPL_ANY=4.00 PRIMER_PAIR_4_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_4=202 PRIMER_PAIR_PENALTY_5=0.0573 PRIMER_LEFT_5_PENALTY=0.047652 PRIMER_RIGHT_5_PENALTY=0.009608 PRIMER_LEFT_5_SEQUENCE=TCTCCACCAAGATCTAAATCCAA PRIMER_RIGHT_5_SEQUENCE=AGATGGAACCATTCTTTGACTGA PRIMER_LEFT_5=6167,23 PRIMER_RIGHT_5=6575,23 PRIMER_LEFT_5_TM=59.952 PRIMER_RIGHT_5_TM=59.990 PRIMER_LEFT_5_GC_PERCENT=39.130 PRIMER_RIGHT_5_GC_PERCENT=39.130 PRIMER_LEFT_5_SELF_ANY=6.00 PRIMER_RIGHT_5_SELF_ANY=6.00 PRIMER_LEFT_5_SELF_END=0.00 PRIMER_RIGHT_5_SELF_END=1.00 PRIMER_LEFT_5_MISPRIMING_SCORE=12.00, reverse MER4C a consensus PRIMER_RIGHT_5_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_5_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_5_END_STABILITY=8.5000 PRIMER_RIGHT_5_END_STABILITY=6.4000 PRIMER_PAIR_5_COMPL_ANY=4.00 PRIMER_PAIR_5_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_5=409 PRIMER_PAIR_PENALTY_6=0.0580 PRIMER_LEFT_6_PENALTY=0.015214 PRIMER_RIGHT_6_PENALTY=0.042816 PRIMER_LEFT_6_SEQUENCE=GGAACCTCGGACAAGTCTAATCT PRIMER_RIGHT_6_SEQUENCE=GCACGTAGGTGATTTCTTAATGC PRIMER_LEFT_6=2496,23 PRIMER_RIGHT_6=2813,23 PRIMER_LEFT_6_TM=60.015 PRIMER_RIGHT_6_TM=60.043 PRIMER_LEFT_6_GC_PERCENT=47.826 PRIMER_RIGHT_6_GC_PERCENT=43.478 PRIMER_LEFT_6_SELF_ANY=4.00 PRIMER_RIGHT_6_SELF_ANY=6.00 PRIMER_LEFT_6_SELF_END=2.00 PRIMER_RIGHT_6_SELF_END=2.00 PRIMER_LEFT_6_MISPRIMING_SCORE=10.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_6_MISPRIMING_SCORE=12.00, reverse L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_PAIR_6_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_6_END_STABILITY=6.6000 PRIMER_RIGHT_6_END_STABILITY=8.4000 PRIMER_PAIR_6_COMPL_ANY=4.00 PRIMER_PAIR_6_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_6=318 PRIMER_PAIR_PENALTY_7=0.0580 PRIMER_LEFT_7_PENALTY=0.015214 PRIMER_RIGHT_7_PENALTY=0.042816 PRIMER_LEFT_7_SEQUENCE=AGGAACCTCGGACAAGTCTAATC PRIMER_RIGHT_7_SEQUENCE=GCACGTAGGTGATTTCTTAATGC PRIMER_LEFT_7=2495,23 PRIMER_RIGHT_7=2813,23 PRIMER_LEFT_7_TM=60.015 PRIMER_RIGHT_7_TM=60.043 PRIMER_LEFT_7_GC_PERCENT=47.826 PRIMER_RIGHT_7_GC_PERCENT=43.478 PRIMER_LEFT_7_SELF_ANY=4.00 PRIMER_RIGHT_7_SELF_ANY=6.00 PRIMER_LEFT_7_SELF_END=3.00 PRIMER_RIGHT_7_SELF_END=2.00 PRIMER_LEFT_7_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_7_MISPRIMING_SCORE=12.00, reverse L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_PAIR_7_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_7_END_STABILITY=5.9000 PRIMER_RIGHT_7_END_STABILITY=8.4000 PRIMER_PAIR_7_COMPL_ANY=4.00 PRIMER_PAIR_7_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_7=319 PRIMER_PAIR_PENALTY_8=0.0583 PRIMER_LEFT_8_PENALTY=0.015214 PRIMER_RIGHT_8_PENALTY=0.043085 PRIMER_LEFT_8_SEQUENCE=AGGAGGATTCTGACGGTTTCTAC PRIMER_RIGHT_8_SEQUENCE=ACAAATCTTCACCACGTTGTTCT PRIMER_LEFT_8=3196,23 PRIMER_RIGHT_8=3365,23 PRIMER_LEFT_8_TM=60.015 PRIMER_RIGHT_8_TM=59.957 PRIMER_LEFT_8_GC_PERCENT=47.826 PRIMER_RIGHT_8_GC_PERCENT=39.130 PRIMER_LEFT_8_SELF_ANY=4.00 PRIMER_RIGHT_8_SELF_ANY=6.00 PRIMER_LEFT_8_SELF_END=0.00 PRIMER_RIGHT_8_SELF_END=0.00 PRIMER_LEFT_8_MISPRIMING_SCORE=11.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_RIGHT_8_MISPRIMING_SCORE=11.00, MER11A a consensus PRIMER_PAIR_8_MISPRIMING_SCORE=21.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_LEFT_8_END_STABILITY=5.4000 PRIMER_RIGHT_8_END_STABILITY=6.4000 PRIMER_PAIR_8_COMPL_ANY=5.00 PRIMER_PAIR_8_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_8=170 PRIMER_PAIR_PENALTY_9=0.0583 PRIMER_LEFT_9_PENALTY=0.015214 PRIMER_RIGHT_9_PENALTY=0.043085 PRIMER_LEFT_9_SEQUENCE=GGAACCTCGGACAAGTCTAATCT PRIMER_RIGHT_9_SEQUENCE=ACAAATCTTCACCACGTTGTTCT PRIMER_LEFT_9=2496,23 PRIMER_RIGHT_9=3365,23 PRIMER_LEFT_9_TM=60.015 PRIMER_RIGHT_9_TM=59.957 PRIMER_LEFT_9_GC_PERCENT=47.826 PRIMER_RIGHT_9_GC_PERCENT=39.130 PRIMER_LEFT_9_SELF_ANY=4.00 PRIMER_RIGHT_9_SELF_ANY=6.00 PRIMER_LEFT_9_SELF_END=2.00 PRIMER_RIGHT_9_SELF_END=0.00 PRIMER_LEFT_9_MISPRIMING_SCORE=10.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_9_MISPRIMING_SCORE=11.00, MER11A a consensus PRIMER_PAIR_9_MISPRIMING_SCORE=20.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_9_END_STABILITY=6.6000 PRIMER_RIGHT_9_END_STABILITY=6.4000 PRIMER_PAIR_9_COMPL_ANY=4.00 PRIMER_PAIR_9_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_9=870 PRIMER_PAIR_PENALTY_10=0.0583 PRIMER_LEFT_10_PENALTY=0.015214 PRIMER_RIGHT_10_PENALTY=0.043085 PRIMER_LEFT_10_SEQUENCE=AGGAACCTCGGACAAGTCTAATC PRIMER_RIGHT_10_SEQUENCE=ACAAATCTTCACCACGTTGTTCT PRIMER_LEFT_10=2495,23 PRIMER_RIGHT_10=3365,23 PRIMER_LEFT_10_TM=60.015 PRIMER_RIGHT_10_TM=59.957 PRIMER_LEFT_10_GC_PERCENT=47.826 PRIMER_RIGHT_10_GC_PERCENT=39.130 PRIMER_LEFT_10_SELF_ANY=4.00 PRIMER_RIGHT_10_SELF_ANY=6.00 PRIMER_LEFT_10_SELF_END=3.00 PRIMER_RIGHT_10_SELF_END=0.00 PRIMER_LEFT_10_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_10_MISPRIMING_SCORE=11.00, MER11A a consensus PRIMER_PAIR_10_MISPRIMING_SCORE=22.00, MER34 a consensus PRIMER_LEFT_10_END_STABILITY=5.9000 PRIMER_RIGHT_10_END_STABILITY=6.4000 PRIMER_PAIR_10_COMPL_ANY=4.00 PRIMER_PAIR_10_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_10=871 PRIMER_PAIR_PENALTY_11=0.0585 PRIMER_LEFT_11_PENALTY=0.015214 PRIMER_RIGHT_11_PENALTY=0.043236 PRIMER_LEFT_11_SEQUENCE=AGGAGGATTCTGACGGTTTCTAC PRIMER_RIGHT_11_SEQUENCE=TTTTGTCAAAGATAGATTCGGGA PRIMER_LEFT_11=3196,23 PRIMER_RIGHT_11=3471,23 PRIMER_LEFT_11_TM=60.015 PRIMER_RIGHT_11_TM=59.957 PRIMER_LEFT_11_GC_PERCENT=47.826 PRIMER_RIGHT_11_GC_PERCENT=34.783 PRIMER_LEFT_11_SELF_ANY=4.00 PRIMER_RIGHT_11_SELF_ANY=7.00 PRIMER_LEFT_11_SELF_END=0.00 PRIMER_RIGHT_11_SELF_END=2.00 PRIMER_LEFT_11_MISPRIMING_SCORE=11.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_RIGHT_11_MISPRIMING_SCORE=12.00, MER4C a consensus PRIMER_PAIR_11_MISPRIMING_SCORE=21.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_11_END_STABILITY=5.4000 PRIMER_RIGHT_11_END_STABILITY=11.4000 PRIMER_PAIR_11_COMPL_ANY=4.00 PRIMER_PAIR_11_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_11=276 PRIMER_PAIR_PENALTY_12=0.0585 PRIMER_LEFT_12_PENALTY=0.015214 PRIMER_RIGHT_12_PENALTY=0.043236 PRIMER_LEFT_12_SEQUENCE=GGAACCTCGGACAAGTCTAATCT PRIMER_RIGHT_12_SEQUENCE=TTTTGTCAAAGATAGATTCGGGA PRIMER_LEFT_12=2496,23 PRIMER_RIGHT_12=3471,23 PRIMER_LEFT_12_TM=60.015 PRIMER_RIGHT_12_TM=59.957 PRIMER_LEFT_12_GC_PERCENT=47.826 PRIMER_RIGHT_12_GC_PERCENT=34.783 PRIMER_LEFT_12_SELF_ANY=4.00 PRIMER_RIGHT_12_SELF_ANY=7.00 PRIMER_LEFT_12_SELF_END=2.00 PRIMER_RIGHT_12_SELF_END=2.00 PRIMER_LEFT_12_MISPRIMING_SCORE=10.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_12_MISPRIMING_SCORE=12.00, MER4C a consensus PRIMER_PAIR_12_MISPRIMING_SCORE=20.00, MER4C a consensus PRIMER_LEFT_12_END_STABILITY=6.6000 PRIMER_RIGHT_12_END_STABILITY=11.4000 PRIMER_PAIR_12_COMPL_ANY=5.00 PRIMER_PAIR_12_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_12=976 PRIMER_PAIR_PENALTY_13=0.0585 PRIMER_LEFT_13_PENALTY=0.015214 PRIMER_RIGHT_13_PENALTY=0.043236 PRIMER_LEFT_13_SEQUENCE=AGGAACCTCGGACAAGTCTAATC PRIMER_RIGHT_13_SEQUENCE=TTTTGTCAAAGATAGATTCGGGA PRIMER_LEFT_13=2495,23 PRIMER_RIGHT_13=3471,23 PRIMER_LEFT_13_TM=60.015 PRIMER_RIGHT_13_TM=59.957 PRIMER_LEFT_13_GC_PERCENT=47.826 PRIMER_RIGHT_13_GC_PERCENT=34.783 PRIMER_LEFT_13_SELF_ANY=4.00 PRIMER_RIGHT_13_SELF_ANY=7.00 PRIMER_LEFT_13_SELF_END=3.00 PRIMER_RIGHT_13_SELF_END=2.00 PRIMER_LEFT_13_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_13_MISPRIMING_SCORE=12.00, MER4C a consensus PRIMER_PAIR_13_MISPRIMING_SCORE=21.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_13_END_STABILITY=5.9000 PRIMER_RIGHT_13_END_STABILITY=11.4000 PRIMER_PAIR_13_COMPL_ANY=5.00 PRIMER_PAIR_13_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_13=977 PRIMER_PAIR_PENALTY_14=0.0589 PRIMER_LEFT_14_PENALTY=0.053769 PRIMER_RIGHT_14_PENALTY=0.005175 PRIMER_LEFT_14_SEQUENCE=GTGGAAAGTTCAGCATACCTCAC PRIMER_RIGHT_14_SEQUENCE=TAAGGAGGGTTAATAGGAGCCAG PRIMER_LEFT_14=2466,23 PRIMER_RIGHT_14=2586,23 PRIMER_LEFT_14_TM=60.054 PRIMER_RIGHT_14_TM=59.995 PRIMER_LEFT_14_GC_PERCENT=47.826 PRIMER_RIGHT_14_GC_PERCENT=47.826 PRIMER_LEFT_14_SELF_ANY=4.00 PRIMER_RIGHT_14_SELF_ANY=4.00 PRIMER_LEFT_14_SELF_END=1.00 PRIMER_RIGHT_14_SELF_END=1.00 PRIMER_LEFT_14_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_14_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_14_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_14_END_STABILITY=6.4000 PRIMER_RIGHT_14_END_STABILITY=9.7000 PRIMER_PAIR_14_COMPL_ANY=4.00 PRIMER_PAIR_14_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_14=121 PRIMER_PAIR_PENALTY_15=0.0589 PRIMER_LEFT_15_PENALTY=0.053769 PRIMER_RIGHT_15_PENALTY=0.005175 PRIMER_LEFT_15_SEQUENCE=GTGGAAAGTTCAGCATACCTCAC PRIMER_RIGHT_15_SEQUENCE=AAGAAGACCTTTTCATTTTTCGG PRIMER_LEFT_15=2466,23 PRIMER_RIGHT_15=2610,23 PRIMER_LEFT_15_TM=60.054 PRIMER_RIGHT_15_TM=59.995 PRIMER_LEFT_15_GC_PERCENT=47.826 PRIMER_RIGHT_15_GC_PERCENT=34.783 PRIMER_LEFT_15_SELF_ANY=4.00 PRIMER_RIGHT_15_SELF_ANY=4.00 PRIMER_LEFT_15_SELF_END=1.00 PRIMER_RIGHT_15_SELF_END=1.00 PRIMER_LEFT_15_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_15_MISPRIMING_SCORE=11.00, MER42c MER42 repetitive sequence: subfamily MER42c - a consensus PRIMER_PAIR_15_MISPRIMING_SCORE=23.00, HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_15_END_STABILITY=6.4000 PRIMER_RIGHT_15_END_STABILITY=10.2000 PRIMER_PAIR_15_COMPL_ANY=6.00 PRIMER_PAIR_15_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_15=145 PRIMER_PAIR_PENALTY_16=0.0607 PRIMER_LEFT_16_PENALTY=0.017590 PRIMER_RIGHT_16_PENALTY=0.043085 PRIMER_LEFT_16_SEQUENCE=GGAGAGACTTAAACTGGGCAAAT PRIMER_RIGHT_16_SEQUENCE=ACAAATCTTCACCACGTTGTTCT PRIMER_LEFT_16=2720,23 PRIMER_RIGHT_16=3365,23 PRIMER_LEFT_16_TM=60.018 PRIMER_RIGHT_16_TM=59.957 PRIMER_LEFT_16_GC_PERCENT=43.478 PRIMER_RIGHT_16_GC_PERCENT=39.130 PRIMER_LEFT_16_SELF_ANY=4.00 PRIMER_RIGHT_16_SELF_ANY=6.00 PRIMER_LEFT_16_SELF_END=2.00 PRIMER_RIGHT_16_SELF_END=0.00 PRIMER_LEFT_16_MISPRIMING_SCORE=12.00, MER25 Older LINE1 5' end region - a consensus PRIMER_RIGHT_16_MISPRIMING_SCORE=11.00, MER11A a consensus PRIMER_PAIR_16_MISPRIMING_SCORE=23.00, MER34 a consensus PRIMER_LEFT_16_END_STABILITY=7.2000 PRIMER_RIGHT_16_END_STABILITY=6.4000 PRIMER_PAIR_16_COMPL_ANY=4.00 PRIMER_PAIR_16_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_16=646 PRIMER_PAIR_PENALTY_17=0.0608 PRIMER_LEFT_17_PENALTY=0.017590 PRIMER_RIGHT_17_PENALTY=0.043236 PRIMER_LEFT_17_SEQUENCE=GGAGAGACTTAAACTGGGCAAAT PRIMER_RIGHT_17_SEQUENCE=TTTTGTCAAAGATAGATTCGGGA PRIMER_LEFT_17=2720,23 PRIMER_RIGHT_17=3471,23 PRIMER_LEFT_17_TM=60.018 PRIMER_RIGHT_17_TM=59.957 PRIMER_LEFT_17_GC_PERCENT=43.478 PRIMER_RIGHT_17_GC_PERCENT=34.783 PRIMER_LEFT_17_SELF_ANY=4.00 PRIMER_RIGHT_17_SELF_ANY=7.00 PRIMER_LEFT_17_SELF_END=2.00 PRIMER_RIGHT_17_SELF_END=2.00 PRIMER_LEFT_17_MISPRIMING_SCORE=12.00, MER25 Older LINE1 5' end region - a consensus PRIMER_RIGHT_17_MISPRIMING_SCORE=12.00, MER4C a consensus PRIMER_PAIR_17_MISPRIMING_SCORE=22.00, MER4C a consensus PRIMER_LEFT_17_END_STABILITY=7.2000 PRIMER_RIGHT_17_END_STABILITY=11.4000 PRIMER_PAIR_17_COMPL_ANY=4.00 PRIMER_PAIR_17_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_17=752 PRIMER_PAIR_PENALTY_18=0.0636 PRIMER_LEFT_18_PENALTY=0.001908 PRIMER_RIGHT_18_PENALTY=0.061709 PRIMER_LEFT_18_SEQUENCE=GCACTAACAAAGAACGAGCACTT PRIMER_RIGHT_18_SEQUENCE=TTCTTGGACTGACAAGACACAGA PRIMER_LEFT_18=6720,23 PRIMER_RIGHT_18=6834,23 PRIMER_LEFT_18_TM=60.002 PRIMER_RIGHT_18_TM=59.938 PRIMER_LEFT_18_GC_PERCENT=43.478 PRIMER_RIGHT_18_GC_PERCENT=43.478 PRIMER_LEFT_18_SELF_ANY=3.00 PRIMER_RIGHT_18_SELF_ANY=5.00 PRIMER_LEFT_18_SELF_END=2.00 PRIMER_RIGHT_18_SELF_END=3.00 PRIMER_LEFT_18_MISPRIMING_SCORE=11.00, L1MA2 3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence PRIMER_RIGHT_18_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_18_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_18_END_STABILITY=6.7000 PRIMER_RIGHT_18_END_STABILITY=6.4000 PRIMER_PAIR_18_COMPL_ANY=5.00 PRIMER_PAIR_18_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_18=115 PRIMER_PAIR_PENALTY_19=0.0636 PRIMER_LEFT_19_PENALTY=0.001908 PRIMER_RIGHT_19_PENALTY=0.061709 PRIMER_LEFT_19_SEQUENCE=GCACTAACAAAGAACGAGCACTT PRIMER_RIGHT_19_SEQUENCE=TCACTTCTTGGACTGACAAGACA PRIMER_LEFT_19=6720,23 PRIMER_RIGHT_19=6838,23 PRIMER_LEFT_19_TM=60.002 PRIMER_RIGHT_19_TM=59.938 PRIMER_LEFT_19_GC_PERCENT=43.478 PRIMER_RIGHT_19_GC_PERCENT=43.478 PRIMER_LEFT_19_SELF_ANY=3.00 PRIMER_RIGHT_19_SELF_ANY=5.00 PRIMER_LEFT_19_SELF_END=2.00 PRIMER_RIGHT_19_SELF_END=3.00 PRIMER_LEFT_19_MISPRIMING_SCORE=11.00, L1MA2 3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence PRIMER_RIGHT_19_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_19_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_19_END_STABILITY=6.7000 PRIMER_RIGHT_19_END_STABILITY=6.4000 PRIMER_PAIR_19_COMPL_ANY=5.00 PRIMER_PAIR_19_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_19=119 =