PRIMER_SEQUENCE_ID=NM_005546 SEQUENCE=TGCATTCTTTGCCCCAAAACTCTTTCCTTTGGTTGTGCTAAGAGGTGATGCCCAAGGTGCACCACCTTTCAAGAACTGGATCATGAACAACTTTATCCTCCTGGAAGAACAGCTCATCAAGAAATCCCAACAAAAGAGAAGAACTTCTCCCTCGAACTTTAAAGTCCGCTTCTTTGTGTTAACCAAAGCCAGCCTGGCATACTTTGAAGATCGTCATGGGAAGAAGCGCACGCTGAAGGGGTCCATTGAGCTCTCCCGAATCAAATGTGTTGAGATTGTGAAAAGTGACATCAGCATCCCATGCCACTATAAATACCCGTTTCAGGTGGTGCATGACAACTACCTCCTATATGTGTTTGCTCCAGATCGTGAGAGCCGGCAGCGCTGGGTGCTGGCCCTTAAAGAAGAAACGAGGAATAATAACAGTTTGGTGCCTAAATATCATCCTAATTTCTGGATGGATGGGAAGTGGAGGTGCTGTTCTCAGCTGGAGAAGCTTGCAACAGGCTGTGCCCAATATGATCCAACCAAGAATGCTTCAAAGAAGCCTCTTCCTCCTACTCCTGAAGACAACAGGCGACCACTTTGGGAACCTGAAGAAACTGTGGTCATTGCCTTATATGACTACCAAACCAATGATCCTCAGGAACTCGCACTGCGGCGCAACGAAGAGTACTGCCTGCTGGACAGTTCTGAGATTCACTGGTGGAGAGTCCAGGACAGGAATGGGCATGAAGGATATGTACCAAGCAGTTATCTGGTGGAAAAATCTCCAAATAATCTGGAAACCTATGAGTGGTACAATAAGAGTATCAGCCGAGACAAAGCTGAAAAACTTCTTTTGGACACAGGCAAAGAAGGAGCCTTCATGGTAAGGGATTCCAGGACTGCAGGAACATACACCGTGTCTGTTTTCACCAAGGCTGTTGTAAGTGAGAACAATCCCTGTATAAAGCATTATCACATCAAGGAAACAAATGACAATCCTAAGCGATACTATGTGGCTGAAAAGTATGTGTTCGATTCCATCCCTCTTCTCATCAACTATCACCAACATAATGGAGGAGGCCTGGTGACTCGACTCCGGTATCCAGTTTGTTTTGGGAGGCAGAAAGCCCCAGTTACAGCAGGGCTGAGATACGGGAAATGGGTGATCGACCCCTCAGAGCTCACTTTTGTGCAAGAGATTGGCAGTGGGCAATTTGGGTTGGTGCATCTGGGCTACTGGCTCAACAAGGACAAGGTGGCTATCAAAACCATTCGGGAAGGGGCTATGTCAGAAGAGGACTTCATAGAGGAGGCTGAAGTAATGATGAAACTCTCTCATCCCAAACTGGTGCAGCTGTATGGGGTGTGCCTGGAGCAGGCCCCCATCTGCCTGGTGTTTGAGTTCATGGAGCACGGCTGCCTGTCAGATTATCTACGCACCCAGCGGGGACTTTTTGCTGCAGAGACCCTGCTGGGCATGTGTCTGGATGTGTGTGAGGGCATGGCCTACCTGGAAGAGGCATGTGTCATCCACAGAGACTTGGCTGCCAGAAATTGTTTGGTGGGAGAAAACCAAGTCATCAAGGTGTCTGACTTTGGGATGACAAGGTTCGTTCTGGATGATCAGTACACCAGTTCCACAGGCACCAAATTCCCGGTGAAGTGGGCATCCCCAGAGGTTTTCTCTTTCAGTCGCTATAGCAGCAAGTCCGATGTGTGGTCATTTGGTGTGCTGATGTGGGAAGTTTTCAGTGAAGGCAAAATCCCGTATGAAAACCGAAGCAACTCAGAGGTGGTGGAAGACATCAGTACCGGATTTCGGTTGTACAAGCCCCGGCTGGCCTCCACACACGTCTACCAGATTATGAATCACTGCTGGAAAGAGAGACCAGAAGATCGGCCAGCCTTCTCCAGACTGCTGCGTCAACTGGCTGAAATTGCAGAATCAGGACTTTAGTAGAGACTGAGTACCAGGCCACGGGCTGCAGATCCTGAATGGAGGAAGGATATGTCCTCATTCCATAGAGCATTAGAAGCTGCCACCAGCCCAGGACCCTCCAGAGGCAGCCTGGCCTGTGGCATCAGTCCCTGAGTCACCATGGAAGCAGCATCCTGACCACAGCTGGCAGTCAAGCCACAGCTGGAGGGTCAGCCACCAAGCTGGGAGCTGAGCCAGAACAGGAGTGATGTCTCTGCCCTTCCTCTAGCCTCTTGTCACATGTGGTGCACAAACCTCAACCTGACAGCTTTCAGACAGCATTCTTGCACTTCTTAGCAACAGAGAGAGACATGAGTAAGACCCAGATTGCTATTTTTATTGTTATTTTTAACATGAATCTAAAGTTTATGGTTCCAGGGACTTTTTATTTGACCCAACAACACAGTATCCCAGGATATGGAGGCAAGGGGAACAAAGAGCATGAGTCTTTTTCCAAGAAAACTGGTGAGTTAAGTAAGATTAGAGTGAGTGTGCTCTGTTGCTGTGATGCTGTCAGCCACAGCTTCCTGCCGTAGAGAATGATAGAGCAGCTGCTCACACAGGAGGCCGGATATTCTGAGAAGCAGCTTTATGAGGTTTTACAGAGTATGCTGCTACCTCTCTCCTTGAAGGGAGCATGGCGAGACCCATTGGATGGATTGGGGTGAACAGTTCAGGTCCCATGCTTGGAGCATTGGGTATCTGATGTCTGCACCAGAACAAGAGAACCTCTGACGGTGGAGAACCATGTGGTGCAAGAAGAGATCTTAGGTCTCTTCTTTTATACCAAGCTCATCTTTTATACCAAGCTGTGCAGGTGACTATGCCTCCTCTTCTGCACAGAATGCTTCCACCAGCATCCTGAGAAGAAATGATTACTTCTGAAAAACATCCTTTTTTCCAGCCTCTGGGAATCAGCCCCCCCTCTCTGCACTATCCGATCCTCATCAACAGAGGGCAGCATTGTGTTGGTCAATGTTCCCTTGGCGAGCAATTGAAACTTGTTTAGGCCCTAGGGTTGAGCAATTTTAAGGTTGAGACTCCAAGTCTCCTAAAATTCTAGGAGAGAAATAAAGAGTCTGTTTTTGCTCAAACCATCAGGATGGAAACAGTCAGGCACTGACTGGGGTGCTTCCAAGAGGCATGAGAGTGCCTACTCTGGCTTGAGCACTTCTATATGCAAGGTGAATATGTACTGAGCTAGGAGACTTCCCTGCAAAATCTCTGTTCACCCTGGGTTCACATCCCCATGAGGTAATATTATTATTCCCATTTTACAAATAATGTAACTGAGGCTTTAAAAAGCCAAGACATCTGCCCAAAGTGATGGAACTAGAAAGTCTAGAGCTGGTATTCTAGCCCAAATCTGTCTGACCGCAATACACAGATTCTTTATTCCTATTCGACACTGGCTTCTACTGAAAATGAAACGGATTGCAGAGGGAATAAATACAAAGATGGAAAGCCAGTAAAGAAGTCAGTATAGAACCACTAGCGAATAGTGTTGCTCTGGCACAGACCACTGTGGTTGATGGCATGGCCCTCCAACTTGGAATAGGATTTTCCTTTTCCTATTCTGTATCCTTACCTTGGTCATGTTAATGACTTTGGAGTTATTCAGTTAATGACCCTTTAATTCTCACAACCAACCAGTCATGTTGCTTGAAGCCATTTATAGACGAGCTTCAAAGCAACTTTAAAAGATTCTTCTGTAGAAGTATGAGTTCTTCCTTTAATTATCATTCCAACTTTCAGCTGTAGTCTTCTTGAACACTTCATGAGGAGGGACATTCCCTGATATAAGAGAGGATGGTGTTGCAATTGGCTCTTTCTAAATCATGTGACGTTTTGACTGGCTTGAGATTCAGATGCATAATTTTTAATTATAATTATTGTGAAGTGGAGAGCCTCAAGATAAAACTCTGTCATTCAGAAGATGATTTTACTCAGCTTATCCAAAATTATCTCTGTTTACTTTTTAGAATTTTGTACATTATCTTTTGGGATCCTTAATTAGAGATGATTTCTGGAACATTCAGTCTAGAAAGAAAACATTGGAATTGACTGATCTCTGTGGTTTGGTTTAGAAAATTCCCCTGTGCATGGTATTACCTTTTTCAAGCTCAGATTCATCTAATCCTCAACTGTACATGTGTACATTCTTCACCTCCTGGTGCCCTATCCCGCAAAATGGGCTTCCTGCCTGGTTTTTCTCTTCTCACATTTTTTAAATGGTCCCCTGTGTTTGTAGAGAACTCCCTTATACAGAGTTTTGGTTCTAGTTTTATTTCGTAGATTTTGCATTTTGTACCTTTTGAGACTATGTATTTATATTTGGATCAGATGCATATTTATTAATGTACAGTCACTGCTAGTGTTCAAAATAAAAATGTTACAAAT PRIMER_OPT_SIZE=23 PRIMER_MIN_SIZE=15 PRIMER_MAX_SIZE=26 PRIMER_MISPRIMING_LIBRARY=Human_rep_in_fasta.txt PRIMER_NUM_RETURN=20 PRIMER_NUM_NS_ACCEPTED=1 PRIMER_PRODUCT_SIZE_RANGE=100-999 PRIMER_EXPLAIN_FLAG=1 PRIMER_LEFT_EXPLAIN=considered 50702, GC content failed 845, low tm 24703, high tm 13600, high any compl 13, high end compl 27, high repeat similarity 41, long poly-x seq 64, ok 11409 PRIMER_RIGHT_EXPLAIN=considered 50701, GC content failed 1006, low tm 25050, high tm 13307, high any compl 2, high end compl 11, high repeat similarity 15, long poly-x seq 64, ok 11246 PRIMER_PAIR_EXPLAIN=considered 12110, unacceptable product size 12026, high any compl 2, high end compl 10, ok 72 PRIMER_PAIR_PENALTY=0.0294 PRIMER_LEFT_PENALTY=0.012719 PRIMER_RIGHT_PENALTY=0.016658 PRIMER_LEFT_SEQUENCE=TGAACAACTTTATCCTCCTGGAA PRIMER_RIGHT_SEQUENCE=TCGCTTAGGATTGTCATTTGTTT PRIMER_LEFT=83,23 PRIMER_RIGHT=993,23 PRIMER_LEFT_TM=59.987 PRIMER_RIGHT_TM=60.017 PRIMER_LEFT_GC_PERCENT=39.130 PRIMER_RIGHT_GC_PERCENT=34.783 PRIMER_LEFT_SELF_ANY=5.00 PRIMER_RIGHT_SELF_ANY=3.00 PRIMER_LEFT_SELF_END=3.00 PRIMER_RIGHT_SELF_END=0.00 PRIMER_LEFT_MISPRIMING_SCORE=11.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_END_STABILITY=8.5000 PRIMER_RIGHT_END_STABILITY=7.0000 PRIMER_PAIR_COMPL_ANY=5.00 PRIMER_PAIR_COMPL_END=2.00 PRIMER_PRODUCT_SIZE=911 PRIMER_PAIR_PENALTY_1=0.0309 PRIMER_LEFT_1_PENALTY=0.016658 PRIMER_RIGHT_1_PENALTY=0.014220 PRIMER_LEFT_1_SEQUENCE=CTACTGAAAATGAAACGGATTGC PRIMER_RIGHT_1_SEQUENCE=AATTGCAACACCATCCTCTCTTA PRIMER_LEFT_1=3381,23 PRIMER_RIGHT_1=3788,23 PRIMER_LEFT_1_TM=60.017 PRIMER_RIGHT_1_TM=60.014 PRIMER_LEFT_1_GC_PERCENT=39.130 PRIMER_RIGHT_1_GC_PERCENT=39.130 PRIMER_LEFT_1_SELF_ANY=3.00 PRIMER_RIGHT_1_SELF_ANY=6.00 PRIMER_LEFT_1_SELF_END=2.00 PRIMER_RIGHT_1_SELF_END=2.00 PRIMER_LEFT_1_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_1_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_1_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_1_END_STABILITY=8.4000 PRIMER_RIGHT_1_END_STABILITY=6.0000 PRIMER_PAIR_1_COMPL_ANY=4.00 PRIMER_PAIR_1_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_1=408 PRIMER_PAIR_PENALTY_2=0.0427 PRIMER_LEFT_2_PENALTY=0.016658 PRIMER_RIGHT_2_PENALTY=0.026007 PRIMER_LEFT_2_SEQUENCE=GAAACAAATGACAATCCTAAGCG PRIMER_RIGHT_2_SEQUENCE=CTTCACTGAAAACTTCCCACATC PRIMER_LEFT_2=970,23 PRIMER_RIGHT_2=1744,23 PRIMER_LEFT_2_TM=60.017 PRIMER_RIGHT_2_TM=60.026 PRIMER_LEFT_2_GC_PERCENT=39.130 PRIMER_RIGHT_2_GC_PERCENT=43.478 PRIMER_LEFT_2_SELF_ANY=3.00 PRIMER_RIGHT_2_SELF_ANY=7.00 PRIMER_LEFT_2_SELF_END=2.00 PRIMER_RIGHT_2_SELF_END=0.00 PRIMER_LEFT_2_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_2_MISPRIMING_SCORE=11.00, MER21B a consensus PRIMER_PAIR_2_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_2_END_STABILITY=10.2000 PRIMER_RIGHT_2_END_STABILITY=6.3000 PRIMER_PAIR_2_COMPL_ANY=3.00 PRIMER_PAIR_2_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_2=775 PRIMER_PAIR_PENALTY_3=0.0555 PRIMER_LEFT_3_PENALTY=0.041315 PRIMER_RIGHT_3_PENALTY=0.014220 PRIMER_LEFT_3_SEQUENCE=GTTCACATCCCCATGAGGTAATA PRIMER_RIGHT_3_SEQUENCE=AATTGCAACACCATCCTCTCTTA PRIMER_LEFT_3=3203,23 PRIMER_RIGHT_3=3788,23 PRIMER_LEFT_3_TM=59.959 PRIMER_RIGHT_3_TM=60.014 PRIMER_LEFT_3_GC_PERCENT=43.478 PRIMER_RIGHT_3_GC_PERCENT=39.130 PRIMER_LEFT_3_SELF_ANY=6.00 PRIMER_RIGHT_3_SELF_ANY=6.00 PRIMER_LEFT_3_SELF_END=3.00 PRIMER_RIGHT_3_SELF_END=2.00 PRIMER_LEFT_3_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_3_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_3_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_3_END_STABILITY=5.2000 PRIMER_RIGHT_3_END_STABILITY=6.0000 PRIMER_PAIR_3_COMPL_ANY=4.00 PRIMER_PAIR_3_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_3=586 PRIMER_PAIR_PENALTY_4=0.0580 PRIMER_LEFT_4_PENALTY=0.041315 PRIMER_RIGHT_4_PENALTY=0.016658 PRIMER_LEFT_4_SEQUENCE=GTTCACATCCCCATGAGGTAATA PRIMER_RIGHT_4_SEQUENCE=GCAATCCGTTTCATTTTCAGTAG PRIMER_LEFT_4=3203,23 PRIMER_RIGHT_4=3403,23 PRIMER_LEFT_4_TM=59.959 PRIMER_RIGHT_4_TM=60.017 PRIMER_LEFT_4_GC_PERCENT=43.478 PRIMER_RIGHT_4_GC_PERCENT=39.130 PRIMER_LEFT_4_SELF_ANY=6.00 PRIMER_RIGHT_4_SELF_ANY=3.00 PRIMER_LEFT_4_SELF_END=3.00 PRIMER_RIGHT_4_SELF_END=0.00 PRIMER_LEFT_4_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_4_MISPRIMING_SCORE=12.00, MER44A Nonautonomous DNA transposon PRIMER_PAIR_4_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_4_END_STABILITY=5.2000 PRIMER_RIGHT_4_END_STABILITY=5.4000 PRIMER_PAIR_4_COMPL_ANY=4.00 PRIMER_PAIR_4_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_4=201 PRIMER_PAIR_PENALTY_5=0.0621 PRIMER_LEFT_5_PENALTY=0.016658 PRIMER_RIGHT_5_PENALTY=0.045432 PRIMER_LEFT_5_SEQUENCE=GAAACAAATGACAATCCTAAGCG PRIMER_RIGHT_5_SEQUENCE=TACTGATGTCTTCCACCACCTCT PRIMER_LEFT_5=970,23 PRIMER_RIGHT_5=1798,23 PRIMER_LEFT_5_TM=60.017 PRIMER_RIGHT_5_TM=60.045 PRIMER_LEFT_5_GC_PERCENT=39.130 PRIMER_RIGHT_5_GC_PERCENT=47.826 PRIMER_LEFT_5_SELF_ANY=3.00 PRIMER_RIGHT_5_SELF_ANY=3.00 PRIMER_LEFT_5_SELF_END=2.00 PRIMER_RIGHT_5_SELF_END=0.00 PRIMER_LEFT_5_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_5_MISPRIMING_SCORE=12.00, reverse LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_5_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_5_END_STABILITY=10.2000 PRIMER_RIGHT_5_END_STABILITY=7.9000 PRIMER_PAIR_5_COMPL_ANY=4.00 PRIMER_PAIR_5_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_5=829 PRIMER_PAIR_PENALTY_6=0.0718 PRIMER_LEFT_6_PENALTY=0.045831 PRIMER_RIGHT_6_PENALTY=0.026007 PRIMER_LEFT_6_SEQUENCE=AATGATGAAACTCTCTCATCCCA PRIMER_RIGHT_6_SEQUENCE=CTTCACTGAAAACTTCCCACATC PRIMER_LEFT_6=1308,23 PRIMER_RIGHT_6=1744,23 PRIMER_LEFT_6_TM=59.954 PRIMER_RIGHT_6_TM=60.026 PRIMER_LEFT_6_GC_PERCENT=39.130 PRIMER_RIGHT_6_GC_PERCENT=43.478 PRIMER_LEFT_6_SELF_ANY=7.00 PRIMER_RIGHT_6_SELF_ANY=7.00 PRIMER_LEFT_6_SELF_END=2.00 PRIMER_RIGHT_6_SELF_END=0.00 PRIMER_LEFT_6_MISPRIMING_SCORE=12.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_6_MISPRIMING_SCORE=11.00, MER21B a consensus PRIMER_PAIR_6_MISPRIMING_SCORE=20.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_LEFT_6_END_STABILITY=9.7000 PRIMER_RIGHT_6_END_STABILITY=6.3000 PRIMER_PAIR_6_COMPL_ANY=4.00 PRIMER_PAIR_6_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_6=437 PRIMER_PAIR_PENALTY_7=0.0718 PRIMER_LEFT_7_PENALTY=0.045831 PRIMER_RIGHT_7_PENALTY=0.026007 PRIMER_LEFT_7_SEQUENCE=ATGATGAAACTCTCTCATCCCAA PRIMER_RIGHT_7_SEQUENCE=CTTCACTGAAAACTTCCCACATC PRIMER_LEFT_7=1309,23 PRIMER_RIGHT_7=1744,23 PRIMER_LEFT_7_TM=59.954 PRIMER_RIGHT_7_TM=60.026 PRIMER_LEFT_7_GC_PERCENT=39.130 PRIMER_RIGHT_7_GC_PERCENT=43.478 PRIMER_LEFT_7_SELF_ANY=7.00 PRIMER_RIGHT_7_SELF_ANY=7.00 PRIMER_LEFT_7_SELF_END=2.00 PRIMER_RIGHT_7_SELF_END=0.00 PRIMER_LEFT_7_MISPRIMING_SCORE=12.00, reverse MER4C a consensus PRIMER_RIGHT_7_MISPRIMING_SCORE=11.00, MER21B a consensus PRIMER_PAIR_7_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_7_END_STABILITY=10.0000 PRIMER_RIGHT_7_END_STABILITY=6.3000 PRIMER_PAIR_7_COMPL_ANY=4.00 PRIMER_PAIR_7_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_7=436 PRIMER_PAIR_PENALTY_8=0.0721 PRIMER_LEFT_8_PENALTY=0.055462 PRIMER_RIGHT_8_PENALTY=0.016658 PRIMER_LEFT_8_SEQUENCE=CAAAACTCTTTCCTTTGGTTGTG PRIMER_RIGHT_8_SEQUENCE=TCGCTTAGGATTGTCATTTGTTT PRIMER_LEFT_8=14,23 PRIMER_RIGHT_8=993,23 PRIMER_LEFT_8_TM=60.055 PRIMER_RIGHT_8_TM=60.017 PRIMER_LEFT_8_GC_PERCENT=39.130 PRIMER_RIGHT_8_GC_PERCENT=34.783 PRIMER_LEFT_8_SELF_ANY=4.00 PRIMER_RIGHT_8_SELF_ANY=3.00 PRIMER_LEFT_8_SELF_END=0.00 PRIMER_RIGHT_8_SELF_END=0.00 PRIMER_LEFT_8_MISPRIMING_SCORE=11.00, reverse MER4A a consensus PRIMER_RIGHT_8_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_8_MISPRIMING_SCORE=21.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_8_END_STABILITY=7.0000 PRIMER_RIGHT_8_END_STABILITY=7.0000 PRIMER_PAIR_8_COMPL_ANY=4.00 PRIMER_PAIR_8_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_8=980 PRIMER_PAIR_PENALTY_9=0.0796 PRIMER_LEFT_9_PENALTY=0.065377 PRIMER_RIGHT_9_PENALTY=0.014220 PRIMER_LEFT_9_SEQUENCE=TGGAAAGCCAGTAAAGAAGTCAG PRIMER_RIGHT_9_SEQUENCE=AATTGCAACACCATCCTCTCTTA PRIMER_LEFT_9=3424,23 PRIMER_RIGHT_9=3788,23 PRIMER_LEFT_9_TM=59.935 PRIMER_RIGHT_9_TM=60.014 PRIMER_LEFT_9_GC_PERCENT=43.478 PRIMER_RIGHT_9_GC_PERCENT=39.130 PRIMER_LEFT_9_SELF_ANY=3.00 PRIMER_RIGHT_9_SELF_ANY=6.00 PRIMER_LEFT_9_SELF_END=1.00 PRIMER_RIGHT_9_SELF_END=2.00 PRIMER_LEFT_9_MISPRIMING_SCORE=12.00, reverse MLT1R MLT1-Mammalian LTR retrotransposon internal sequence - a consensus PRIMER_RIGHT_9_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_9_MISPRIMING_SCORE=23.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_9_END_STABILITY=6.4000 PRIMER_RIGHT_9_END_STABILITY=6.0000 PRIMER_PAIR_9_COMPL_ANY=4.00 PRIMER_PAIR_9_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_9=365 PRIMER_PAIR_PENALTY_10=0.0805 PRIMER_LEFT_10_PENALTY=0.016658 PRIMER_RIGHT_10_PENALTY=0.063793 PRIMER_LEFT_10_SEQUENCE=CTACTGAAAATGAAACGGATTGC PRIMER_RIGHT_10_SEQUENCE=TTTTAAAGTTGCTTTGAAGCTCG PRIMER_LEFT_10=3381,23 PRIMER_RIGHT_10=3667,23 PRIMER_LEFT_10_TM=60.017 PRIMER_RIGHT_10_TM=60.064 PRIMER_LEFT_10_GC_PERCENT=39.130 PRIMER_RIGHT_10_GC_PERCENT=34.783 PRIMER_LEFT_10_SELF_ANY=3.00 PRIMER_RIGHT_10_SELF_ANY=7.00 PRIMER_LEFT_10_SELF_END=2.00 PRIMER_RIGHT_10_SELF_END=2.00 PRIMER_LEFT_10_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_10_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_10_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_10_END_STABILITY=8.4000 PRIMER_RIGHT_10_END_STABILITY=9.9000 PRIMER_PAIR_10_COMPL_ANY=4.00 PRIMER_PAIR_10_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_10=287 PRIMER_PAIR_PENALTY_11=0.0822 PRIMER_LEFT_11_PENALTY=0.018372 PRIMER_RIGHT_11_PENALTY=0.063793 PRIMER_LEFT_11_SEQUENCE=CCACTAGCGAATAGTGTTGCTCT PRIMER_RIGHT_11_SEQUENCE=TTTTAAAGTTGCTTTGAAGCTCG PRIMER_LEFT_11=3454,23 PRIMER_RIGHT_11=3667,23 PRIMER_LEFT_11_TM=59.982 PRIMER_RIGHT_11_TM=60.064 PRIMER_LEFT_11_GC_PERCENT=47.826 PRIMER_RIGHT_11_GC_PERCENT=34.783 PRIMER_LEFT_11_SELF_ANY=6.00 PRIMER_RIGHT_11_SELF_ANY=7.00 PRIMER_LEFT_11_SELF_END=3.00 PRIMER_RIGHT_11_SELF_END=2.00 PRIMER_LEFT_11_MISPRIMING_SCORE=12.00, MER4C a consensus PRIMER_RIGHT_11_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_11_MISPRIMING_SCORE=21.00, MER4C a consensus PRIMER_LEFT_11_END_STABILITY=7.9000 PRIMER_RIGHT_11_END_STABILITY=9.9000 PRIMER_PAIR_11_COMPL_ANY=3.00 PRIMER_PAIR_11_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_11=214 PRIMER_PAIR_PENALTY_12=0.0860 PRIMER_LEFT_12_PENALTY=0.016658 PRIMER_RIGHT_12_PENALTY=0.069319 PRIMER_LEFT_12_SEQUENCE=CTACTGAAAATGAAACGGATTGC PRIMER_RIGHT_12_SEQUENCE=TTAAAGTTGCTTTGAAGCTCGTC PRIMER_LEFT_12=3381,23 PRIMER_RIGHT_12=3665,23 PRIMER_LEFT_12_TM=60.017 PRIMER_RIGHT_12_TM=60.069 PRIMER_LEFT_12_GC_PERCENT=39.130 PRIMER_RIGHT_12_GC_PERCENT=39.130 PRIMER_LEFT_12_SELF_ANY=3.00 PRIMER_RIGHT_12_SELF_ANY=6.00 PRIMER_LEFT_12_SELF_END=2.00 PRIMER_RIGHT_12_SELF_END=2.00 PRIMER_LEFT_12_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_12_MISPRIMING_SCORE=12.00, MER25 Older LINE1 5' end region - a consensus PRIMER_PAIR_12_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_12_END_STABILITY=8.4000 PRIMER_RIGHT_12_END_STABILITY=8.1000 PRIMER_PAIR_12_COMPL_ANY=4.00 PRIMER_PAIR_12_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_12=285 PRIMER_PAIR_PENALTY_13=0.0877 PRIMER_LEFT_13_PENALTY=0.018372 PRIMER_RIGHT_13_PENALTY=0.069319 PRIMER_LEFT_13_SEQUENCE=CCACTAGCGAATAGTGTTGCTCT PRIMER_RIGHT_13_SEQUENCE=TTAAAGTTGCTTTGAAGCTCGTC PRIMER_LEFT_13=3454,23 PRIMER_RIGHT_13=3665,23 PRIMER_LEFT_13_TM=59.982 PRIMER_RIGHT_13_TM=60.069 PRIMER_LEFT_13_GC_PERCENT=47.826 PRIMER_RIGHT_13_GC_PERCENT=39.130 PRIMER_LEFT_13_SELF_ANY=6.00 PRIMER_RIGHT_13_SELF_ANY=6.00 PRIMER_LEFT_13_SELF_END=3.00 PRIMER_RIGHT_13_SELF_END=2.00 PRIMER_LEFT_13_MISPRIMING_SCORE=12.00, MER4C a consensus PRIMER_RIGHT_13_MISPRIMING_SCORE=12.00, MER25 Older LINE1 5' end region - a consensus PRIMER_PAIR_13_MISPRIMING_SCORE=20.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_13_END_STABILITY=7.9000 PRIMER_RIGHT_13_END_STABILITY=8.1000 PRIMER_PAIR_13_COMPL_ANY=4.00 PRIMER_PAIR_13_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_13=212 PRIMER_PAIR_PENALTY_14=0.0913 PRIMER_LEFT_14_PENALTY=0.045831 PRIMER_RIGHT_14_PENALTY=0.045432 PRIMER_LEFT_14_SEQUENCE=ATGATGAAACTCTCTCATCCCAA PRIMER_RIGHT_14_SEQUENCE=TACTGATGTCTTCCACCACCTCT PRIMER_LEFT_14=1309,23 PRIMER_RIGHT_14=1798,23 PRIMER_LEFT_14_TM=59.954 PRIMER_RIGHT_14_TM=60.045 PRIMER_LEFT_14_GC_PERCENT=39.130 PRIMER_RIGHT_14_GC_PERCENT=47.826 PRIMER_LEFT_14_SELF_ANY=7.00 PRIMER_RIGHT_14_SELF_ANY=3.00 PRIMER_LEFT_14_SELF_END=2.00 PRIMER_RIGHT_14_SELF_END=0.00 PRIMER_LEFT_14_MISPRIMING_SCORE=12.00, reverse MER4C a consensus PRIMER_RIGHT_14_MISPRIMING_SCORE=12.00, reverse LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_14_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_14_END_STABILITY=10.0000 PRIMER_RIGHT_14_END_STABILITY=7.9000 PRIMER_PAIR_14_COMPL_ANY=4.00 PRIMER_PAIR_14_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_14=490 PRIMER_PAIR_PENALTY_15=0.0913 PRIMER_LEFT_15_PENALTY=0.045831 PRIMER_RIGHT_15_PENALTY=0.045432 PRIMER_LEFT_15_SEQUENCE=AATGATGAAACTCTCTCATCCCA PRIMER_RIGHT_15_SEQUENCE=TACTGATGTCTTCCACCACCTCT PRIMER_LEFT_15=1308,23 PRIMER_RIGHT_15=1798,23 PRIMER_LEFT_15_TM=59.954 PRIMER_RIGHT_15_TM=60.045 PRIMER_LEFT_15_GC_PERCENT=39.130 PRIMER_RIGHT_15_GC_PERCENT=47.826 PRIMER_LEFT_15_SELF_ANY=7.00 PRIMER_RIGHT_15_SELF_ANY=3.00 PRIMER_LEFT_15_SELF_END=2.00 PRIMER_RIGHT_15_SELF_END=0.00 PRIMER_LEFT_15_MISPRIMING_SCORE=12.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_15_MISPRIMING_SCORE=12.00, reverse LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_15_MISPRIMING_SCORE=21.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_LEFT_15_END_STABILITY=9.7000 PRIMER_RIGHT_15_END_STABILITY=7.9000 PRIMER_PAIR_15_COMPL_ANY=4.00 PRIMER_PAIR_15_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_15=491 PRIMER_PAIR_PENALTY_16=0.0946 PRIMER_LEFT_16_PENALTY=0.012719 PRIMER_RIGHT_16_PENALTY=0.081865 PRIMER_LEFT_16_SEQUENCE=TGAACAACTTTATCCTCCTGGAA PRIMER_RIGHT_16_SEQUENCE=CCTCCTCCATTATGTTGGTGATA PRIMER_LEFT_16=83,23 PRIMER_RIGHT_16=1067,23 PRIMER_LEFT_16_TM=59.987 PRIMER_RIGHT_16_TM=60.082 PRIMER_LEFT_16_GC_PERCENT=39.130 PRIMER_RIGHT_16_GC_PERCENT=43.478 PRIMER_LEFT_16_SELF_ANY=5.00 PRIMER_RIGHT_16_SELF_ANY=5.00 PRIMER_LEFT_16_SELF_END=3.00 PRIMER_RIGHT_16_SELF_END=2.00 PRIMER_LEFT_16_MISPRIMING_SCORE=11.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_16_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_16_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_16_END_STABILITY=8.5000 PRIMER_RIGHT_16_END_STABILITY=5.9000 PRIMER_PAIR_16_COMPL_ANY=5.00 PRIMER_PAIR_16_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_16=985 PRIMER_PAIR_PENALTY_17=0.0948 PRIMER_LEFT_17_PENALTY=0.012719 PRIMER_RIGHT_17_PENALTY=0.082052 PRIMER_LEFT_17_SEQUENCE=TGAACAACTTTATCCTCCTGGAA PRIMER_RIGHT_17_SEQUENCE=CTTACAACAGCCTTGGTGAAAAC PRIMER_LEFT_17=83,23 PRIMER_RIGHT_17=932,23 PRIMER_LEFT_17_TM=59.987 PRIMER_RIGHT_17_TM=60.082 PRIMER_LEFT_17_GC_PERCENT=39.130 PRIMER_RIGHT_17_GC_PERCENT=43.478 PRIMER_LEFT_17_SELF_ANY=5.00 PRIMER_RIGHT_17_SELF_ANY=5.00 PRIMER_LEFT_17_SELF_END=3.00 PRIMER_RIGHT_17_SELF_END=1.00 PRIMER_LEFT_17_MISPRIMING_SCORE=11.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_17_MISPRIMING_SCORE=12.00, reverse MER25 Older LINE1 5' end region - a consensus PRIMER_PAIR_17_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_17_END_STABILITY=8.5000 PRIMER_RIGHT_17_END_STABILITY=7.0000 PRIMER_PAIR_17_COMPL_ANY=3.00 PRIMER_PAIR_17_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_17=850 PRIMER_PAIR_PENALTY_18=0.0948 PRIMER_LEFT_18_PENALTY=0.012719 PRIMER_RIGHT_18_PENALTY=0.082052 PRIMER_LEFT_18_SEQUENCE=TGAACAACTTTATCCTCCTGGAA PRIMER_RIGHT_18_SEQUENCE=ACTTACAACAGCCTTGGTGAAAA PRIMER_LEFT_18=83,23 PRIMER_RIGHT_18=933,23 PRIMER_LEFT_18_TM=59.987 PRIMER_RIGHT_18_TM=60.082 PRIMER_LEFT_18_GC_PERCENT=39.130 PRIMER_RIGHT_18_GC_PERCENT=39.130 PRIMER_LEFT_18_SELF_ANY=5.00 PRIMER_RIGHT_18_SELF_ANY=5.00 PRIMER_LEFT_18_SELF_END=3.00 PRIMER_RIGHT_18_SELF_END=3.00 PRIMER_LEFT_18_MISPRIMING_SCORE=11.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_18_MISPRIMING_SCORE=11.00, reverse MER25 Older LINE1 5' end region - a consensus PRIMER_PAIR_18_MISPRIMING_SCORE=21.00, HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_18_END_STABILITY=8.5000 PRIMER_RIGHT_18_END_STABILITY=7.3000 PRIMER_PAIR_18_COMPL_ANY=3.00 PRIMER_PAIR_18_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_18=851 PRIMER_PAIR_PENALTY_19=0.1018 PRIMER_LEFT_19_PENALTY=0.016658 PRIMER_RIGHT_19_PENALTY=0.085102 PRIMER_LEFT_19_SEQUENCE=GAAACAAATGACAATCCTAAGCG PRIMER_RIGHT_19_SEQUENCE=GTACTGATGTCTTCCACCACCTC PRIMER_LEFT_19=970,23 PRIMER_RIGHT_19=1799,23 PRIMER_LEFT_19_TM=60.017 PRIMER_RIGHT_19_TM=59.915 PRIMER_LEFT_19_GC_PERCENT=39.130 PRIMER_RIGHT_19_GC_PERCENT=52.174 PRIMER_LEFT_19_SELF_ANY=3.00 PRIMER_RIGHT_19_SELF_ANY=4.00 PRIMER_LEFT_19_SELF_END=2.00 PRIMER_RIGHT_19_SELF_END=2.00 PRIMER_LEFT_19_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_19_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_19_MISPRIMING_SCORE=24.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_19_END_STABILITY=10.2000 PRIMER_RIGHT_19_END_STABILITY=7.6000 PRIMER_PAIR_19_COMPL_ANY=4.00 PRIMER_PAIR_19_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_19=830 =