PRIMER_SEQUENCE_ID=NM_000314 SEQUENCE=CCTCCCCTCGCCCGGCGCGGTCCCGTCCGCCTCTCGCTCGCCTCCCGCCTCCCCTCGGTCTTCCGAGGCGCCCGGGCTCCCGGCGCGGCGGCGGAGGGGGCGGGCAGGCCGGCGGGCGGTGATGTGGCGGGACTCTTTATGCGCTGCGGCAGGATACGCGCTCGGCGCTGGGACGCGACTGCGCTCAGTTCTCTCCTCTCGGAAGCTGCAGCCATGATGGAAGTTTGAGAGTTGAGCCGCTGTGAGGCGAGGCCGGGCTCAGGCGAGGGAGATGAGAGACGGCGGCGGCCGCGGCCCGGAGCCCCTCTCAGCGCCTGTGAGCAGCCGCGGGGGCAGCGCCCTCGGGGAGCCGGCCGGCCTGCGGCGGCGGCAGCGGCGGCGTTTCTCGCCTCCTCTTCGTCTTTTCTAACCGTGCAGCCTCTTCCTCGGCTTCTCCTGAAAGGGAAGGTGGAAGCCGTGGGCTCGGGCGGGAGCCGGCTGAGGCGCGGCGGCGGCGGCGGCACCTCCCGCTCCTGGAGCGGGGGGGAGAAGCGGCGGCGGCGGCGGCCGCGGCGGCTGCAGCTCCAGGGAGGGGGTCTGAGTCGCCTGTCACCATTTCCAGGGCTGGGAACGCCGGAGAGTTGGTCTCTCCCCTTCTACTGCCTCCAACACGGCGGCGGCGGCGGCGGCACATCCAGGGACCCGGGCCGGTTTTAAACCTCCCGTCCGCCGCCGCCGCACCCCCCGTGGCCCGGGCTCCGGAGGCCGCCGGCGGAGGCAGCCGTTCGGAGGATTATTCGTCTTCTCCCCATTCCGCTGCCGCCGCTGCCAGGCCTCTGGCTGCTGAGGAGAAGCAGGCCCAGTCGCTGCAACCATCCAGCAGCCGCCGCAGCAGCCATTACCCGGCTGCGGTCCAGAGCCAAGCGGCGGCAGAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCTATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAGGTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCTTTGTGCTGAAAGACATTATGACACCGCCAAATTTAATTGCAGAGTTGCACAATATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTTTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTGTAATGATATGTGCATATTTATTACATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGGAGTAACTATTCCCAGTCAGAGGCGCTATGTGTATTATTATAGCTACCTGTTAAAGAATCATCTGGATTATAGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACACGACGGGAAGACAAGTTCATGTACTTTGAGTTCCCTCAGCCGTTACCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTAAAAAAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAATATCTAGTACTTACTTTAACAAAAAATGATCTTGACAAAGCAAATAAAGACAAAGCCAACCGATACTTTTCTCCAAATTTTAAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGCTAGCAGTTCAACTTCTGTAACACCAGATGTTAGTGACAATGAACCTGATCATTATAGATATTCTGACACCACTGACTCTGATCCAGAGAATGAACCTTTTGATGAAGATCAGCATACACAAATTACAAAAGTCTGAATTTTTTTTTATCAAGAGGGATAAAACACCATGAAAATAAACTTGAATAAACTGAAAATGGACCTTTTTTTTTTTAATGGCAATAGGACATTGTGTCAGATTACCAGTTATAGGAACAATTCTCTTTTCCTGACCAATCTTGTTTTACCCTATACATCCACAGGGTTTTGACACTTGTTGTCCAGTTGAAAAAAGGTTGTGTAGCTGTGTCATGTATATACCTTTTTGTGTCAAAAGGACATTTAAAATTCAATTAGGATTAATAAAGATGGCACTTTCCCGTTTTATTCCAGTTTTATAAAAAGTGGAGACAGACTGATGTGTATACGTAGGAATTTTTTCCTTTTGTGTTCTGTCACCAACTGAAGTGGCTAAAGAGCTTTGTGATATACTGGTTCACATCCTACCCCTTTGCACTTGTGGCAACAGATAAGTTTGCAGTTGGCTAAGAGAGGTTTCCGAAGGGTTTTGCTACATTCTAATGCATGTATTCGGGTTAGGGGAATGGAGGGAATGCTCAGAAAGGAAATAATTTTATGCTGGACTCTGGACCATATACCATCTCCAGCTATTTACACACACCTTTCTTTAGCATGCTACAGTTATTAATCTGGACATTCGAGGAATTGGCCGCTGTCACTGCTTGTTGTTTGCGCATTTTTTTTTAAAGCATATTGGTGCTAGAAAAGGCAGCTAAAGGAAGTGAATCTGTATTGGGGTACAGGAATGAACCTTCTGCAACATCTTAAGATCCACAAATGAAGGGATATAAAAATAATGTCATAGGTAAGAAACACAGCAACAATGACTTAACCATATAAATGTGGAGGCTATCAACAAAGAATGGGCTTGAAACATTATAAAAATTGACAATGATTTATTAAATATGTTTTCTCAATTGTAACGACTTCTCCATCTCCTGTGTAATCAAGGCCAGTGCTAAAATTCAGATGCTGTTAGTACCTACATCAGTCAACAACTTACACTTATTTTACTAGTTTTCAATCATAATACCTGCTGTGGATGCTTCATGTGCTGCCTGCAAGCTTCTTTTTTCTCATTAAATATAAAATATTTTGTAATGCTGCACAGAAATTTTCAATTTGAGATTCTACAGTAAGCGTTTTTTTTCTTTGAAGATTTATGATGCACTTATTCAATAGCTGTCAGCCG PRIMER_OPT_SIZE=23 PRIMER_MIN_SIZE=15 PRIMER_MAX_SIZE=26 PRIMER_MISPRIMING_LIBRARY=Human_rep_in_fasta.txt PRIMER_NUM_RETURN=20 PRIMER_NUM_NS_ACCEPTED=1 PRIMER_PRODUCT_SIZE_RANGE=100-999 PRIMER_EXPLAIN_FLAG=1 PRIMER_LEFT_EXPLAIN=considered 38405, GC content failed 4883, low tm 17495, high tm 8685, high any compl 4, high end compl 19, high repeat similarity 52, long poly-x seq 183, ok 7084 PRIMER_RIGHT_EXPLAIN=considered 38183, GC content failed 4367, low tm 18055, high tm 8309, high any compl 1, high end compl 14, high repeat similarity 11, long poly-x seq 214, ok 7212 PRIMER_PAIR_EXPLAIN=considered 671, unacceptable product size 617, high any compl 1, high end compl 3, ok 50 PRIMER_PAIR_PENALTY=0.0205 PRIMER_LEFT_PENALTY=0.006308 PRIMER_RIGHT_PENALTY=0.014220 PRIMER_LEFT_SEQUENCE=TGTATTGGGGTACAGGAATGAAC PRIMER_RIGHT_SEQUENCE=TCTTTGTTGATAGCCTCCACATT PRIMER_LEFT=2949,23 PRIMER_RIGHT=3082,23 PRIMER_LEFT_TM=59.994 PRIMER_RIGHT_TM=60.014 PRIMER_LEFT_GC_PERCENT=43.478 PRIMER_RIGHT_GC_PERCENT=39.130 PRIMER_LEFT_SELF_ANY=4.00 PRIMER_RIGHT_SELF_ANY=4.00 PRIMER_LEFT_SELF_END=2.00 PRIMER_RIGHT_SELF_END=1.00 PRIMER_LEFT_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_MISPRIMING_SCORE=24.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_END_STABILITY=6.7000 PRIMER_RIGHT_END_STABILITY=6.6000 PRIMER_PAIR_COMPL_ANY=4.00 PRIMER_PAIR_COMPL_END=3.00 PRIMER_PRODUCT_SIZE=134 PRIMER_PAIR_PENALTY_1=0.0391 PRIMER_LEFT_1_PENALTY=0.032744 PRIMER_RIGHT_1_PENALTY=0.006308 PRIMER_LEFT_1_SEQUENCE=ATACATCCACAGGGTTTTGACAC PRIMER_RIGHT_1_SEQUENCE=GTTCATTCCTGTACCCCAATACA PRIMER_LEFT_1=2391,23 PRIMER_RIGHT_1=2971,23 PRIMER_LEFT_1_TM=60.033 PRIMER_RIGHT_1_TM=59.994 PRIMER_LEFT_1_GC_PERCENT=43.478 PRIMER_RIGHT_1_GC_PERCENT=43.478 PRIMER_LEFT_1_SELF_ANY=3.00 PRIMER_RIGHT_1_SELF_ANY=4.00 PRIMER_LEFT_1_SELF_END=2.00 PRIMER_RIGHT_1_SELF_END=2.00 PRIMER_LEFT_1_MISPRIMING_SCORE=11.00, LTR6 LTR from human SSAV-related endogenous retroviral LTR-like element PRIMER_RIGHT_1_MISPRIMING_SCORE=12.00, L1MD2 3'-end of L1 repeat (subfamily L1MD2) - a consensus sequence PRIMER_PAIR_1_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_1_END_STABILITY=6.1000 PRIMER_RIGHT_1_END_STABILITY=5.6000 PRIMER_PAIR_1_COMPL_ANY=5.00 PRIMER_PAIR_1_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_1=581 PRIMER_PAIR_PENALTY_2=0.0470 PRIMER_LEFT_2_PENALTY=0.032744 PRIMER_RIGHT_2_PENALTY=0.014220 PRIMER_LEFT_2_SEQUENCE=ATACATCCACAGGGTTTTGACAC PRIMER_RIGHT_2_SEQUENCE=TCTTTGTTGATAGCCTCCACATT PRIMER_LEFT_2=2391,23 PRIMER_RIGHT_2=3082,23 PRIMER_LEFT_2_TM=60.033 PRIMER_RIGHT_2_TM=60.014 PRIMER_LEFT_2_GC_PERCENT=43.478 PRIMER_RIGHT_2_GC_PERCENT=39.130 PRIMER_LEFT_2_SELF_ANY=3.00 PRIMER_RIGHT_2_SELF_ANY=4.00 PRIMER_LEFT_2_SELF_END=2.00 PRIMER_RIGHT_2_SELF_END=1.00 PRIMER_LEFT_2_MISPRIMING_SCORE=11.00, LTR6 LTR from human SSAV-related endogenous retroviral LTR-like element PRIMER_RIGHT_2_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_2_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_2_END_STABILITY=6.1000 PRIMER_RIGHT_2_END_STABILITY=6.6000 PRIMER_PAIR_2_COMPL_ANY=5.00 PRIMER_PAIR_2_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_2=692 PRIMER_PAIR_PENALTY_3=0.0547 PRIMER_LEFT_3_PENALTY=0.021925 PRIMER_RIGHT_3_PENALTY=0.032744 PRIMER_LEFT_3_SEQUENCE=AAATTTTTAAAGGCACAAGAGGC PRIMER_RIGHT_3_SEQUENCE=GTGTCAAAACCCTGTGGATGTAT PRIMER_LEFT_3=1460,23 PRIMER_RIGHT_3=2413,23 PRIMER_LEFT_3_TM=60.022 PRIMER_RIGHT_3_TM=60.033 PRIMER_LEFT_3_GC_PERCENT=34.783 PRIMER_RIGHT_3_GC_PERCENT=43.478 PRIMER_LEFT_3_SELF_ANY=6.00 PRIMER_RIGHT_3_SELF_ANY=3.00 PRIMER_LEFT_3_SELF_END=2.00 PRIMER_RIGHT_3_SELF_END=2.00 PRIMER_LEFT_3_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_3_MISPRIMING_SCORE=12.00, MER42a MER42 repetitive sequence: subfamily MER42a - a consensus PRIMER_PAIR_3_MISPRIMING_SCORE=22.00, L1MB7 3'-end of L1 repeat (subfamily L1MB7) - a consensus sequence PRIMER_LEFT_3_END_STABILITY=9.4000 PRIMER_RIGHT_3_END_STABILITY=5.6000 PRIMER_PAIR_3_COMPL_ANY=4.00 PRIMER_PAIR_3_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_3=954 PRIMER_PAIR_PENALTY_4=0.0626 PRIMER_LEFT_4_PENALTY=0.014220 PRIMER_RIGHT_4_PENALTY=0.048359 PRIMER_LEFT_4_SEQUENCE=TTGACCAATGGCTAAGTGAAGAT PRIMER_RIGHT_4_SEQUENCE=TTTGCCCCGATGTAATAAATATG PRIMER_LEFT_4=1353,23 PRIMER_RIGHT_4=1462,23 PRIMER_LEFT_4_TM=60.014 PRIMER_RIGHT_4_TM=59.952 PRIMER_LEFT_4_GC_PERCENT=39.130 PRIMER_RIGHT_4_GC_PERCENT=34.783 PRIMER_LEFT_4_SELF_ANY=5.00 PRIMER_RIGHT_4_SELF_ANY=5.00 PRIMER_LEFT_4_SELF_END=2.00 PRIMER_RIGHT_4_SELF_END=3.00 PRIMER_LEFT_4_MISPRIMING_SCORE=12.00, MER44A Nonautonomous DNA transposon PRIMER_RIGHT_4_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_4_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_4_END_STABILITY=6.6000 PRIMER_RIGHT_4_END_STABILITY=5.8000 PRIMER_PAIR_4_COMPL_ANY=4.00 PRIMER_PAIR_4_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_4=110 PRIMER_PAIR_PENALTY_5=0.0807 PRIMER_LEFT_5_PENALTY=0.066430 PRIMER_RIGHT_5_PENALTY=0.014220 PRIMER_LEFT_5_SEQUENCE=AGGCAGCTAAAGGAAGTGAATCT PRIMER_RIGHT_5_SEQUENCE=TCTTTGTTGATAGCCTCCACATT PRIMER_LEFT_5=2927,23 PRIMER_RIGHT_5=3082,23 PRIMER_LEFT_5_TM=59.934 PRIMER_RIGHT_5_TM=60.014 PRIMER_LEFT_5_GC_PERCENT=43.478 PRIMER_RIGHT_5_GC_PERCENT=39.130 PRIMER_LEFT_5_SELF_ANY=4.00 PRIMER_RIGHT_5_SELF_ANY=4.00 PRIMER_LEFT_5_SELF_END=1.00 PRIMER_RIGHT_5_SELF_END=1.00 PRIMER_LEFT_5_MISPRIMING_SCORE=11.00, L1MA5 3'-end of L1 repeat (subfamily L1MA5) - a consensus sequence PRIMER_RIGHT_5_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_5_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_5_END_STABILITY=6.6000 PRIMER_RIGHT_5_END_STABILITY=6.6000 PRIMER_PAIR_5_COMPL_ANY=4.00 PRIMER_PAIR_5_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_5=156 PRIMER_PAIR_PENALTY_6=0.0811 PRIMER_LEFT_6_PENALTY=0.048359 PRIMER_RIGHT_6_PENALTY=0.032744 PRIMER_LEFT_6_SEQUENCE=CATATTTATTACATCGGGGCAAA PRIMER_RIGHT_6_SEQUENCE=GTGTCAAAACCCTGTGGATGTAT PRIMER_LEFT_6=1440,23 PRIMER_RIGHT_6=2413,23 PRIMER_LEFT_6_TM=59.952 PRIMER_RIGHT_6_TM=60.033 PRIMER_LEFT_6_GC_PERCENT=34.783 PRIMER_RIGHT_6_GC_PERCENT=43.478 PRIMER_LEFT_6_SELF_ANY=5.00 PRIMER_RIGHT_6_SELF_ANY=3.00 PRIMER_LEFT_6_SELF_END=0.00 PRIMER_RIGHT_6_SELF_END=2.00 PRIMER_LEFT_6_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_6_MISPRIMING_SCORE=12.00, MER42a MER42 repetitive sequence: subfamily MER42a - a consensus PRIMER_PAIR_6_MISPRIMING_SCORE=23.00, MER42c MER42 repetitive sequence: subfamily MER42c - a consensus PRIMER_LEFT_6_END_STABILITY=8.8000 PRIMER_RIGHT_6_END_STABILITY=5.6000 PRIMER_PAIR_6_COMPL_ANY=6.00 PRIMER_PAIR_6_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_6=974 PRIMER_PAIR_PENALTY_7=0.0934 PRIMER_LEFT_7_PENALTY=0.014220 PRIMER_RIGHT_7_PENALTY=0.079168 PRIMER_LEFT_7_SEQUENCE=TTGACCAATGGCTAAGTGAAGAT PRIMER_RIGHT_7_SEQUENCE=GTACATGAACTTGTCTTCCCGTC PRIMER_LEFT_7=1353,23 PRIMER_RIGHT_7=1747,23 PRIMER_LEFT_7_TM=60.014 PRIMER_RIGHT_7_TM=59.921 PRIMER_LEFT_7_GC_PERCENT=39.130 PRIMER_RIGHT_7_GC_PERCENT=47.826 PRIMER_LEFT_7_SELF_ANY=5.00 PRIMER_RIGHT_7_SELF_ANY=6.00 PRIMER_LEFT_7_SELF_END=2.00 PRIMER_RIGHT_7_SELF_END=1.00 PRIMER_LEFT_7_MISPRIMING_SCORE=12.00, MER44A Nonautonomous DNA transposon PRIMER_RIGHT_7_MISPRIMING_SCORE=11.00, MER42a MER42 repetitive sequence: subfamily MER42a - a consensus PRIMER_PAIR_7_MISPRIMING_SCORE=20.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_7_END_STABILITY=6.6000 PRIMER_RIGHT_7_END_STABILITY=9.6000 PRIMER_PAIR_7_COMPL_ANY=5.00 PRIMER_PAIR_7_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_7=395 PRIMER_PAIR_PENALTY_8=0.0949 PRIMER_LEFT_8_PENALTY=0.088543 PRIMER_RIGHT_8_PENALTY=0.006308 PRIMER_LEFT_8_SEQUENCE=TGGACTCTGGACCATATACCATC PRIMER_RIGHT_8_SEQUENCE=GTTCATTCCTGTACCCCAATACA PRIMER_LEFT_8=2780,23 PRIMER_RIGHT_8=2971,23 PRIMER_LEFT_8_TM=60.089 PRIMER_RIGHT_8_TM=59.994 PRIMER_LEFT_8_GC_PERCENT=47.826 PRIMER_RIGHT_8_GC_PERCENT=43.478 PRIMER_LEFT_8_SELF_ANY=7.00 PRIMER_RIGHT_8_SELF_ANY=4.00 PRIMER_LEFT_8_SELF_END=2.00 PRIMER_RIGHT_8_SELF_END=2.00 PRIMER_LEFT_8_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_8_MISPRIMING_SCORE=12.00, L1MD2 3'-end of L1 repeat (subfamily L1MD2) - a consensus sequence PRIMER_PAIR_8_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_8_END_STABILITY=8.1000 PRIMER_RIGHT_8_END_STABILITY=5.6000 PRIMER_PAIR_8_COMPL_ANY=3.00 PRIMER_PAIR_8_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_8=192 PRIMER_PAIR_PENALTY_9=0.1011 PRIMER_LEFT_9_PENALTY=0.021925 PRIMER_RIGHT_9_PENALTY=0.079168 PRIMER_LEFT_9_SEQUENCE=AAATTTTTAAAGGCACAAGAGGC PRIMER_RIGHT_9_SEQUENCE=GTACATGAACTTGTCTTCCCGTC PRIMER_LEFT_9=1460,23 PRIMER_RIGHT_9=1747,23 PRIMER_LEFT_9_TM=60.022 PRIMER_RIGHT_9_TM=59.921 PRIMER_LEFT_9_GC_PERCENT=34.783 PRIMER_RIGHT_9_GC_PERCENT=47.826 PRIMER_LEFT_9_SELF_ANY=6.00 PRIMER_RIGHT_9_SELF_ANY=6.00 PRIMER_LEFT_9_SELF_END=2.00 PRIMER_RIGHT_9_SELF_END=1.00 PRIMER_LEFT_9_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_9_MISPRIMING_SCORE=11.00, MER42a MER42 repetitive sequence: subfamily MER42a - a consensus PRIMER_PAIR_9_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_9_END_STABILITY=9.4000 PRIMER_RIGHT_9_END_STABILITY=9.6000 PRIMER_PAIR_9_COMPL_ANY=5.00 PRIMER_PAIR_9_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_9=288 PRIMER_PAIR_PENALTY_10=0.1028 PRIMER_LEFT_10_PENALTY=0.088543 PRIMER_RIGHT_10_PENALTY=0.014220 PRIMER_LEFT_10_SEQUENCE=TGGACTCTGGACCATATACCATC PRIMER_RIGHT_10_SEQUENCE=TCTTTGTTGATAGCCTCCACATT PRIMER_LEFT_10=2780,23 PRIMER_RIGHT_10=3082,23 PRIMER_LEFT_10_TM=60.089 PRIMER_RIGHT_10_TM=60.014 PRIMER_LEFT_10_GC_PERCENT=47.826 PRIMER_RIGHT_10_GC_PERCENT=39.130 PRIMER_LEFT_10_SELF_ANY=7.00 PRIMER_RIGHT_10_SELF_ANY=4.00 PRIMER_LEFT_10_SELF_END=2.00 PRIMER_RIGHT_10_SELF_END=1.00 PRIMER_LEFT_10_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_10_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_10_MISPRIMING_SCORE=24.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_10_END_STABILITY=8.1000 PRIMER_RIGHT_10_END_STABILITY=6.6000 PRIMER_PAIR_10_COMPL_ANY=4.00 PRIMER_PAIR_10_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_10=303 PRIMER_PAIR_PENALTY_11=0.1170 PRIMER_LEFT_11_PENALTY=0.068602 PRIMER_RIGHT_11_PENALTY=0.048359 PRIMER_LEFT_11_SEQUENCE=ACTTGAAGGCGTATACAGGAACA PRIMER_RIGHT_11_SEQUENCE=TTTGCCCCGATGTAATAAATATG PRIMER_LEFT_11=1153,23 PRIMER_RIGHT_11=1462,23 PRIMER_LEFT_11_TM=60.069 PRIMER_RIGHT_11_TM=59.952 PRIMER_LEFT_11_GC_PERCENT=43.478 PRIMER_RIGHT_11_GC_PERCENT=34.783 PRIMER_LEFT_11_SELF_ANY=6.00 PRIMER_RIGHT_11_SELF_ANY=5.00 PRIMER_LEFT_11_SELF_END=0.00 PRIMER_RIGHT_11_SELF_END=3.00 PRIMER_LEFT_11_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_11_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_11_MISPRIMING_SCORE=24.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_11_END_STABILITY=6.7000 PRIMER_RIGHT_11_END_STABILITY=5.8000 PRIMER_PAIR_11_COMPL_ANY=4.00 PRIMER_PAIR_11_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_11=310 PRIMER_PAIR_PENALTY_12=0.1219 PRIMER_LEFT_12_PENALTY=0.115612 PRIMER_RIGHT_12_PENALTY=0.006308 PRIMER_LEFT_12_SEQUENCE=CCTATACATCCACAGGGTTTTGA PRIMER_RIGHT_12_SEQUENCE=GTTCATTCCTGTACCCCAATACA PRIMER_LEFT_12=2388,23 PRIMER_RIGHT_12=2971,23 PRIMER_LEFT_12_TM=60.116 PRIMER_RIGHT_12_TM=59.994 PRIMER_LEFT_12_GC_PERCENT=43.478 PRIMER_RIGHT_12_GC_PERCENT=43.478 PRIMER_LEFT_12_SELF_ANY=4.00 PRIMER_RIGHT_12_SELF_ANY=4.00 PRIMER_LEFT_12_SELF_END=1.00 PRIMER_RIGHT_12_SELF_END=2.00 PRIMER_LEFT_12_MISPRIMING_SCORE=11.00, MER42a MER42 repetitive sequence: subfamily MER42a - a consensus PRIMER_RIGHT_12_MISPRIMING_SCORE=12.00, L1MD2 3'-end of L1 repeat (subfamily L1MD2) - a consensus sequence PRIMER_PAIR_12_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_12_END_STABILITY=7.3000 PRIMER_RIGHT_12_END_STABILITY=5.6000 PRIMER_PAIR_12_COMPL_ANY=5.00 PRIMER_PAIR_12_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_12=584 PRIMER_PAIR_PENALTY_13=0.1275 PRIMER_LEFT_13_PENALTY=0.048359 PRIMER_RIGHT_13_PENALTY=0.079168 PRIMER_LEFT_13_SEQUENCE=CATATTTATTACATCGGGGCAAA PRIMER_RIGHT_13_SEQUENCE=GTACATGAACTTGTCTTCCCGTC PRIMER_LEFT_13=1440,23 PRIMER_RIGHT_13=1747,23 PRIMER_LEFT_13_TM=59.952 PRIMER_RIGHT_13_TM=59.921 PRIMER_LEFT_13_GC_PERCENT=34.783 PRIMER_RIGHT_13_GC_PERCENT=47.826 PRIMER_LEFT_13_SELF_ANY=5.00 PRIMER_RIGHT_13_SELF_ANY=6.00 PRIMER_LEFT_13_SELF_END=0.00 PRIMER_RIGHT_13_SELF_END=1.00 PRIMER_LEFT_13_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_13_MISPRIMING_SCORE=11.00, MER42a MER42 repetitive sequence: subfamily MER42a - a consensus PRIMER_PAIR_13_MISPRIMING_SCORE=22.00, MER42c MER42 repetitive sequence: subfamily MER42c - a consensus PRIMER_LEFT_13_END_STABILITY=8.8000 PRIMER_RIGHT_13_END_STABILITY=9.6000 PRIMER_PAIR_13_COMPL_ANY=4.00 PRIMER_PAIR_13_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_13=308 PRIMER_PAIR_PENALTY_14=0.1298 PRIMER_LEFT_14_PENALTY=0.115612 PRIMER_RIGHT_14_PENALTY=0.014220 PRIMER_LEFT_14_SEQUENCE=CCTATACATCCACAGGGTTTTGA PRIMER_RIGHT_14_SEQUENCE=TCTTTGTTGATAGCCTCCACATT PRIMER_LEFT_14=2388,23 PRIMER_RIGHT_14=3082,23 PRIMER_LEFT_14_TM=60.116 PRIMER_RIGHT_14_TM=60.014 PRIMER_LEFT_14_GC_PERCENT=43.478 PRIMER_RIGHT_14_GC_PERCENT=39.130 PRIMER_LEFT_14_SELF_ANY=4.00 PRIMER_RIGHT_14_SELF_ANY=4.00 PRIMER_LEFT_14_SELF_END=1.00 PRIMER_RIGHT_14_SELF_END=1.00 PRIMER_LEFT_14_MISPRIMING_SCORE=11.00, MER42a MER42 repetitive sequence: subfamily MER42a - a consensus PRIMER_RIGHT_14_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_14_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_14_END_STABILITY=7.3000 PRIMER_RIGHT_14_END_STABILITY=6.6000 PRIMER_PAIR_14_COMPL_ANY=5.00 PRIMER_PAIR_14_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_14=695 PRIMER_PAIR_PENALTY_15=0.1298 PRIMER_LEFT_15_PENALTY=0.115612 PRIMER_RIGHT_15_PENALTY=0.014220 PRIMER_LEFT_15_SEQUENCE=CTGTATTGGGGTACAGGAATGAA PRIMER_RIGHT_15_SEQUENCE=TCTTTGTTGATAGCCTCCACATT PRIMER_LEFT_15=2948,23 PRIMER_RIGHT_15=3082,23 PRIMER_LEFT_15_TM=60.116 PRIMER_RIGHT_15_TM=60.014 PRIMER_LEFT_15_GC_PERCENT=43.478 PRIMER_RIGHT_15_GC_PERCENT=39.130 PRIMER_LEFT_15_SELF_ANY=5.00 PRIMER_RIGHT_15_SELF_ANY=4.00 PRIMER_LEFT_15_SELF_END=2.00 PRIMER_RIGHT_15_SELF_END=1.00 PRIMER_LEFT_15_MISPRIMING_SCORE=11.00, L1MD2 3'-end of L1 repeat (subfamily L1MD2) - a consensus sequence PRIMER_RIGHT_15_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_15_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_15_END_STABILITY=6.9000 PRIMER_RIGHT_15_END_STABILITY=6.6000 PRIMER_PAIR_15_COMPL_ANY=4.00 PRIMER_PAIR_15_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_15=135 PRIMER_PAIR_PENALTY_16=0.1363 PRIMER_LEFT_16_PENALTY=0.122060 PRIMER_RIGHT_16_PENALTY=0.014220 PRIMER_LEFT_16_SEQUENCE=AGGAAGTGAATCTGTATTGGGGT PRIMER_RIGHT_16_SEQUENCE=TCTTTGTTGATAGCCTCCACATT PRIMER_LEFT_16=2937,23 PRIMER_RIGHT_16=3082,23 PRIMER_LEFT_16_TM=60.122 PRIMER_RIGHT_16_TM=60.014 PRIMER_LEFT_16_GC_PERCENT=43.478 PRIMER_RIGHT_16_GC_PERCENT=39.130 PRIMER_LEFT_16_SELF_ANY=3.00 PRIMER_RIGHT_16_SELF_ANY=4.00 PRIMER_LEFT_16_SELF_END=0.00 PRIMER_RIGHT_16_SELF_END=1.00 PRIMER_LEFT_16_MISPRIMING_SCORE=12.00, reverse L1MB7 3'-end of L1 repeat (subfamily L1MB7) - a consensus sequence PRIMER_RIGHT_16_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_16_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_16_END_STABILITY=10.6000 PRIMER_RIGHT_16_END_STABILITY=6.6000 PRIMER_PAIR_16_COMPL_ANY=4.00 PRIMER_PAIR_16_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_16=146 PRIMER_PAIR_PENALTY_17=0.1363 PRIMER_LEFT_17_PENALTY=0.014220 PRIMER_RIGHT_17_PENALTY=0.122120 PRIMER_LEFT_17_SEQUENCE=TTGACCAATGGCTAAGTGAAGAT PRIMER_RIGHT_17_SEQUENCE=TCTGGTCCTGGTATGAAGAATGT PRIMER_LEFT_17=1353,23 PRIMER_RIGHT_17=1878,23 PRIMER_LEFT_17_TM=60.014 PRIMER_RIGHT_17_TM=59.878 PRIMER_LEFT_17_GC_PERCENT=39.130 PRIMER_RIGHT_17_GC_PERCENT=43.478 PRIMER_LEFT_17_SELF_ANY=5.00 PRIMER_RIGHT_17_SELF_ANY=3.00 PRIMER_LEFT_17_SELF_END=2.00 PRIMER_RIGHT_17_SELF_END=1.00 PRIMER_LEFT_17_MISPRIMING_SCORE=12.00, MER44A Nonautonomous DNA transposon PRIMER_RIGHT_17_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_17_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_17_END_STABILITY=6.6000 PRIMER_RIGHT_17_END_STABILITY=6.6000 PRIMER_PAIR_17_COMPL_ANY=5.00 PRIMER_PAIR_17_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_17=526 PRIMER_PAIR_PENALTY_18=0.1368 PRIMER_LEFT_18_PENALTY=0.088469 PRIMER_RIGHT_18_PENALTY=0.048359 PRIMER_LEFT_18_SEQUENCE=TTGAAGGCGTATACAGGAACAAT PRIMER_RIGHT_18_SEQUENCE=TTTGCCCCGATGTAATAAATATG PRIMER_LEFT_18=1155,23 PRIMER_RIGHT_18=1462,23 PRIMER_LEFT_18_TM=59.912 PRIMER_RIGHT_18_TM=59.952 PRIMER_LEFT_18_GC_PERCENT=39.130 PRIMER_RIGHT_18_GC_PERCENT=34.783 PRIMER_LEFT_18_SELF_ANY=6.00 PRIMER_RIGHT_18_SELF_ANY=5.00 PRIMER_LEFT_18_SELF_END=2.00 PRIMER_RIGHT_18_SELF_END=3.00 PRIMER_LEFT_18_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_18_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_18_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_18_END_STABILITY=6.6000 PRIMER_RIGHT_18_END_STABILITY=5.8000 PRIMER_PAIR_18_COMPL_ANY=4.00 PRIMER_PAIR_18_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_18=308 PRIMER_PAIR_PENALTY_19=0.1440 PRIMER_LEFT_19_PENALTY=0.021925 PRIMER_RIGHT_19_PENALTY=0.122120 PRIMER_LEFT_19_SEQUENCE=AAATTTTTAAAGGCACAAGAGGC PRIMER_RIGHT_19_SEQUENCE=TCTGGTCCTGGTATGAAGAATGT PRIMER_LEFT_19=1460,23 PRIMER_RIGHT_19=1878,23 PRIMER_LEFT_19_TM=60.022 PRIMER_RIGHT_19_TM=59.878 PRIMER_LEFT_19_GC_PERCENT=34.783 PRIMER_RIGHT_19_GC_PERCENT=43.478 PRIMER_LEFT_19_SELF_ANY=6.00 PRIMER_RIGHT_19_SELF_ANY=3.00 PRIMER_LEFT_19_SELF_END=2.00 PRIMER_RIGHT_19_SELF_END=1.00 PRIMER_LEFT_19_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_19_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_19_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_19_END_STABILITY=9.4000 PRIMER_RIGHT_19_END_STABILITY=6.6000 PRIMER_PAIR_19_COMPL_ANY=5.00 PRIMER_PAIR_19_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_19=419 =