PRIMER_SEQUENCE_ID=NM_018984 SEQUENCE=CCGGGCCCGGCCCGGGCGGCGGTGGCGGTGGCGGCTCTAGCTCGAGACGTCTGTGGCGCCCTCGCACCGCGCCGCAGCCATGGTCCTGGTGACCCTGCAGCGCTCGCCCACGCCCAGCGCCGCCTCCTCCTCGGCCAGCAACAGCGAGTTGGAGGCTGGCAGCGAAGAAGATCGAAAATTAAACCTCAGCTTAAGTGAGAGCTTTTTCATGGTGAAAGGCGCAGCCCTCTTCTTACAACAGGGAAGCAGCCCTCAAGGCCAGCGGAGTCTTCAGCACCCCCACAAGCATGCAGGTGATCTGCCTCAACATCTTCAGGTGATGATCAACCTTCTGCGTTGCGAAGACAGAATCAAGCTGGCAGTGCGCCTGGAGAGCGCCTGGGCGGACCGGGTCCGGTACATGGTGGTGGTGTACAGCAGCGGGCGCCAGGACACCGAGGAGAATATCTTGCTGGGAGTGGACTTTTCCAGTAAGGAAAGTAAAAGCTGCACCATTGGGATGGTTCTCCGACTGTGGAGCGACACGAAAATCCACCTTGATGGAGATGGTGGGTTCAGCGTGAGCACAGCAGGAAGGATGCACATATTTAAGCCTGTGTCTGTCCAGGCCATGTGGTCTGCCCTGCAGGTGCTTCACAAGGCCTGCGAAGTGGCCCGGAGGCACAACTACTTCCCCGGGGGTGTAGCTCTCATCTGGGCTACCTACTATGAGAGCTGCATCAGCTCCGAGCAGAGCTGCATCAACGAGTGGAACGCCATGCAGGACCTGGAGTCTACGCGGCCCGACTCCCCCGCGCTATTTGTGGACAAGCCCACTGAAGGGGAAAGGACCGAGCGCCTCATCAAAGCCAAGCTCCGAAGCATCATGATGAGCCAGGATCTAGAAAATGTGACTTCCAAAGAGATTCGTAATGAATTAGAGAAACAGATGAATTGTAACTTGAAGGAACTCAAGGAATTTATAGACAATGAGATGCTACTTATCTTGGGACAGATGGACAAGCCCTCCCTTATCTTCGATCATCTTTATCTCGGCTCTGAATGGAATGCATCCAATCTGGAGGAACTGCAGGGCTCAGGGGTTGATTACATTTTAAATGTTACCAGAGAAATCGATAATTTTTTTCCTGGCTTATTTGCATATCATAACATCCGAGTCTACGATGAAGAGACCACAGACCTCCTCGCCCACTGGAATGAAGCGTATCATTTTATAAACAAAGCGAAGAGGAACCATTCCAAGTGCCTGGTGCATTGCAAAATGGGCGTGAGTCGCTCGGCCTCCACAGTCATAGCCTATGCAATGAAGGAATTCGGCTGGCCTCTGGAAAAAGCATATAACTATGTAAAGCAGAAGCGCAGCATCACGCGCCCCAACGCGGGCTTTATGAGGCAGCTGTCTGAGTATGAAGGCATCTTGGATGCAAGCAAACAGCGGCACAACAAGCTGTGGCGTCAGCAGACAGACAGCAGCCTCCAGCAGCCTGTGGATGACCCTGCAGGACCTGGCGACTTCTTGCCAGAGACCCCAGATGGCACCCCGGAAAGCCAGCTGCCCTTCTTGGATGATGCCGCCCAGCCCGGCTTAGGGCCCCCCCTCCCCTGCTGTTTCCGGCGACTCTCAGACCCCCTTCTGCCTTCCCCTGAGGATGAAACTGGCAGCTTGGTCCACCTGGAGGATCCGGAGAGGGAGGCTCTGTTGGAGGAAGCTGCTCCACCTGCAGAGGTGCACAGGCCGGCCAGACAGCCCCAGCAAGGTTCCGGACTCTGTGAGAAGGATGTGAAGAAGAAACTAGAGTTTGGGAGTCCCAAAGGTCGGAGCGGCTCCTTGCTGCAGGTGGAGGAGACGGAAAGGGAGGAGGGCCTGGGAGCAGGGAGGTGGGGGCAGCTTCCAACCCAGCTCGATCAAAACCTGCTCAACTCGGAGAACCTAAACAACAACAGCAAGAGGAGCTGTCCCAACGGCATGGAGGATGATGCTATATTTGGGATCCTTAACAAAGTGAAGCCTTCCTATAAATCCTGTGCCGACTGCATGTACCCTACAGCCAGCGGGGCTCCTGAGGCCTCCAGGGAGCGATGTGAGGACCCCAATGCTCCCGCCATCTGCACCCAGCCAGCCTTCCTACCCCACATCACGTCCTCCCCTGTGGCCCACTTGGCCAGCAGGTCCCGTGTTCCGGAGAAGCCAGCCTCTGGCCCAACCGAACCTCCCCCGTTCCTACCACCAGCAGGCTCCAGGAGGGCAGACACCAGTGGCCCTGGGGCTGGAGCTGCCCTAGAGCCACCAGCCAGCCTTTTGGAACCTTCCAGAGAGACCCCAAAAGTCCTGCCAAAGTCCCTCCTTTTGAAGAATTCTCACTGTGATAAGAACCCTCCCAGCACAGAAGTGGTAATAAAGGAAGAATCGTCACCCAAGAAAGATATGAAGCCAGCCAAGGACCTGAGGCTTCTGTTCAGTAATGAATCTGAGAAGCCGACAACCAACAGCTACCTGATGCAGCACCAGGAGTCCATCATTCAGCTGCAGAAGGCAGGCTTGGTCCGCAAGCACACCAAAGAGCTAGAGCGGCTGAAGAGCGTGCCTGCAGACCCAGCACCTCCCTCCAGGGATGGCCCTGCCAGCAGGCTGGAGGCCAGCATCCCCGAGGAGAGCCAGGATCCAGCCGCGCTCCACGAGCTGGGCCCCCTGGTTATGCCCAGCCAGGCCGGGAGTGATGAGAAGTCAGAGGCCGCCCCCGCTTCATTGGAAGGAGGCTCACTGAAGAGCCCCCCTCCTTTCTTCTACCGCCTGGACCACACCAGTAGTTTCTCAAAAGACTTTCTGAAGACCATCTGCTACACCCCCACCTCCTCTTCCATGAGCTCCAACCTGACCCGGAGTTCCAGCAGCGATAGCATCCACAGTGTCCGTGGGAAGCCCGGGCTGGTGAAGCAGCGGACGCAGGAGATTGAGACCCGGCTCCGGCTGGCGGGCCTCACCGTCTCTTCCCCACTGAAGCGCTCACACTCTCTTGCCAAGCTGGGGAGTCTCACCTTCTCAACGGAAGACCTGTCCAGTGAGGCTGACCCGTCCACCGTCGCTGACTCCCAGGACACCACTTTGAGTGAATCTTCCTTCTTGCATGAGCCCCAGGGAACCCCGAGGGACCCAGCTGCAACCTCCAAACCATCAGGGAAACCCGCCCCAGAAAACTTAAAGAGCCCTTCGTGGATGAGCAAAAGCTGACCCGCCTTTTGCTGCGTCAGGCTGGGCGGATATTTTCATATGATCCCTCCCTCACTTTCACTGTGGATTTGGATCGACCCCTTACATCTTGATTTCCCTTAAACGAGTGAAGTCATCCTAACTTTTCCCCTACTCTTGCCATAGAGAGGAGGAGAAGAAACTAACCAACATGCAGCACAAGAAGGGGAGCTGTCAGTCGTGTGGCCTGGGAGAACCAGGAGCCGCCGGCCAGGAGACACAAAACTCCGCTCCCACCGTGTCTTCAAGAAGAACCATGTTTTAGGAAGAACGTGCACACATAGGCGCACACATCCAGACTGTTCCCTTCGCATCCTGCAGAAGAGTCCTGGTGGTGGCAGCCTCACCGCGGCACACGTTCTAGCTCATTCTTGGCCTCGCAGAAAACTCTCGGATGGCAACATTAAGTCCTACCTCTGTTCTCGCTGCGCTTTTTATTTTTAAAACACACGAATGACCAAGGCTTGTTCCAGGGAATAATGCTCTGTCTGAAAGCGTTTTTCCAAAAAAAGAATTTTTCGTTTTGTGTTTTGGTTGGGACCCCAGACGTGTCAAGACTTTTAACCCGACAGCCCCAAGCACTGCTGAGTAAAGTCATCAGATGAGTAGTCCCACGCTGTTGTTGAGCTGACTCTGTGCCCGAATGGTGGTGCAGGCGCCCTGTCCTGGTTGTGTTGTTACGTGTTTGACCAGCACAGGGGTCCGGTGGGGAAAATGTATGGGTTGTTCTCAGTTGTTGCTAATGCTGAAGTTTAAATCTCAAGGGGAAGGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA PRIMER_OPT_SIZE=23 PRIMER_MIN_SIZE=15 PRIMER_MAX_SIZE=26 PRIMER_MISPRIMING_LIBRARY=Human_rep_in_fasta.txt PRIMER_NUM_RETURN=20 PRIMER_NUM_NS_ACCEPTED=1 PRIMER_PRODUCT_SIZE_RANGE=100-999 PRIMER_EXPLAIN_FLAG=1 PRIMER_LEFT_EXPLAIN=considered 47183, GC content failed 1226, low tm 13885, high tm 22519, high any compl 11, high end compl 54, high repeat similarity 75, long poly-x seq 86, ok 9327 PRIMER_RIGHT_EXPLAIN=considered 47061, GC content failed 1427, low tm 13954, high tm 22131, high any compl 2, high end compl 12, high repeat similarity 18, long poly-x seq 101, ok 9416 PRIMER_PAIR_EXPLAIN=considered 1946, unacceptable product size 1878, high end compl 3, ok 65 PRIMER_PAIR_PENALTY=0.0892 PRIMER_LEFT_PENALTY=0.007752 PRIMER_RIGHT_PENALTY=0.081398 PRIMER_LEFT_SEQUENCE=CGTCACCCAAGAAAGATATGAAG PRIMER_RIGHT_SEQUENCE=GAGAAACTACTGGTGTGGTCCAG PRIMER_LEFT=2408,23 PRIMER_RIGHT=2813,23 PRIMER_LEFT_TM=60.008 PRIMER_RIGHT_TM=60.081 PRIMER_LEFT_GC_PERCENT=43.478 PRIMER_RIGHT_GC_PERCENT=52.174 PRIMER_LEFT_SELF_ANY=4.00 PRIMER_RIGHT_SELF_ANY=5.00 PRIMER_LEFT_SELF_END=0.00 PRIMER_RIGHT_SELF_END=3.00 PRIMER_LEFT_MISPRIMING_SCORE=12.00, L1PA2 3'-end of L1 repeat (subfamily L1PA2) - a consensus sequence PRIMER_RIGHT_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_END_STABILITY=7.0000 PRIMER_RIGHT_END_STABILITY=8.2000 PRIMER_PAIR_COMPL_ANY=4.00 PRIMER_PAIR_COMPL_END=0.00 PRIMER_PRODUCT_SIZE=406 PRIMER_PAIR_PENALTY_1=0.0896 PRIMER_LEFT_1_PENALTY=0.008181 PRIMER_RIGHT_1_PENALTY=0.081398 PRIMER_LEFT_1_SEQUENCE=CAAAGTCCCTCCTTTTGAAGAAT PRIMER_RIGHT_1_SEQUENCE=GAGAAACTACTGGTGTGGTCCAG PRIMER_LEFT_1=2333,23 PRIMER_RIGHT_1=2813,23 PRIMER_LEFT_1_TM=59.992 PRIMER_RIGHT_1_TM=60.081 PRIMER_LEFT_1_GC_PERCENT=39.130 PRIMER_RIGHT_1_GC_PERCENT=52.174 PRIMER_LEFT_1_SELF_ANY=4.00 PRIMER_RIGHT_1_SELF_ANY=5.00 PRIMER_LEFT_1_SELF_END=2.00 PRIMER_RIGHT_1_SELF_END=3.00 PRIMER_LEFT_1_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_1_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_1_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_1_END_STABILITY=6.6000 PRIMER_RIGHT_1_END_STABILITY=8.2000 PRIMER_PAIR_1_COMPL_ANY=4.00 PRIMER_PAIR_1_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_1=481 PRIMER_PAIR_PENALTY_2=0.0965 PRIMER_LEFT_2_PENALTY=0.007752 PRIMER_RIGHT_2_PENALTY=0.088773 PRIMER_LEFT_2_SEQUENCE=CGTCACCCAAGAAAGATATGAAG PRIMER_RIGHT_2_SEQUENCE=AAATCAAGATGTAAGGGGTCGAT PRIMER_LEFT_2=2408,23 PRIMER_RIGHT_2=3323,23 PRIMER_LEFT_2_TM=60.008 PRIMER_RIGHT_2_TM=60.089 PRIMER_LEFT_2_GC_PERCENT=43.478 PRIMER_RIGHT_2_GC_PERCENT=39.130 PRIMER_LEFT_2_SELF_ANY=4.00 PRIMER_RIGHT_2_SELF_ANY=4.00 PRIMER_LEFT_2_SELF_END=0.00 PRIMER_RIGHT_2_SELF_END=2.00 PRIMER_LEFT_2_MISPRIMING_SCORE=12.00, L1PA2 3'-end of L1 repeat (subfamily L1PA2) - a consensus sequence PRIMER_RIGHT_2_MISPRIMING_SCORE=12.00, MARINER1 Human mariner PRIMER_PAIR_2_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_2_END_STABILITY=7.0000 PRIMER_RIGHT_2_END_STABILITY=8.3000 PRIMER_PAIR_2_COMPL_ANY=4.00 PRIMER_PAIR_2_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_2=916 PRIMER_PAIR_PENALTY_3=0.0970 PRIMER_LEFT_3_PENALTY=0.008181 PRIMER_RIGHT_3_PENALTY=0.088773 PRIMER_LEFT_3_SEQUENCE=CAAAGTCCCTCCTTTTGAAGAAT PRIMER_RIGHT_3_SEQUENCE=AAATCAAGATGTAAGGGGTCGAT PRIMER_LEFT_3=2333,23 PRIMER_RIGHT_3=3323,23 PRIMER_LEFT_3_TM=59.992 PRIMER_RIGHT_3_TM=60.089 PRIMER_LEFT_3_GC_PERCENT=39.130 PRIMER_RIGHT_3_GC_PERCENT=39.130 PRIMER_LEFT_3_SELF_ANY=4.00 PRIMER_RIGHT_3_SELF_ANY=4.00 PRIMER_LEFT_3_SELF_END=2.00 PRIMER_RIGHT_3_SELF_END=2.00 PRIMER_LEFT_3_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_3_MISPRIMING_SCORE=12.00, MARINER1 Human mariner PRIMER_PAIR_3_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_3_END_STABILITY=6.6000 PRIMER_RIGHT_3_END_STABILITY=8.3000 PRIMER_PAIR_3_COMPL_ANY=4.00 PRIMER_PAIR_3_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_3=991 PRIMER_PAIR_PENALTY_4=0.1229 PRIMER_LEFT_4_PENALTY=0.007752 PRIMER_RIGHT_4_PENALTY=0.115144 PRIMER_LEFT_4_SEQUENCE=CGTCACCCAAGAAAGATATGAAG PRIMER_RIGHT_4_SEQUENCE=GCAAGAAGGAAGATTCACTCAAA PRIMER_LEFT_4=2408,23 PRIMER_RIGHT_4=3124,23 PRIMER_LEFT_4_TM=60.008 PRIMER_RIGHT_4_TM=59.885 PRIMER_LEFT_4_GC_PERCENT=43.478 PRIMER_RIGHT_4_GC_PERCENT=39.130 PRIMER_LEFT_4_SELF_ANY=4.00 PRIMER_RIGHT_4_SELF_ANY=4.00 PRIMER_LEFT_4_SELF_END=0.00 PRIMER_RIGHT_4_SELF_END=1.00 PRIMER_LEFT_4_MISPRIMING_SCORE=12.00, L1PA2 3'-end of L1 repeat (subfamily L1PA2) - a consensus sequence PRIMER_RIGHT_4_MISPRIMING_SCORE=12.00, reverse MER11A a consensus PRIMER_PAIR_4_MISPRIMING_SCORE=21.00, MLT1R MLT1-Mammalian LTR retrotransposon internal sequence - a consensus PRIMER_LEFT_4_END_STABILITY=7.0000 PRIMER_RIGHT_4_END_STABILITY=7.3000 PRIMER_PAIR_4_COMPL_ANY=4.00 PRIMER_PAIR_4_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_4=717 PRIMER_PAIR_PENALTY_5=0.1525 PRIMER_LEFT_5_PENALTY=0.144318 PRIMER_RIGHT_5_PENALTY=0.008181 PRIMER_LEFT_5_SEQUENCE=GTCTGAGTATGAAGGCATCTTGG PRIMER_RIGHT_5_SEQUENCE=ATTCTTCAAAAGGAGGGACTTTG PRIMER_LEFT_5=1398,23 PRIMER_RIGHT_5=2355,23 PRIMER_LEFT_5_TM=60.144 PRIMER_RIGHT_5_TM=59.992 PRIMER_LEFT_5_GC_PERCENT=47.826 PRIMER_RIGHT_5_GC_PERCENT=39.130 PRIMER_LEFT_5_SELF_ANY=3.00 PRIMER_RIGHT_5_SELF_ANY=4.00 PRIMER_LEFT_5_SELF_END=0.00 PRIMER_RIGHT_5_SELF_END=0.00 PRIMER_LEFT_5_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_5_MISPRIMING_SCORE=11.00, reverse L1MC2 3'-end of L1 repeat (subfamily L1MC2) - a consensus sequence PRIMER_PAIR_5_MISPRIMING_SCORE=21.00, HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_5_END_STABILITY=8.5000 PRIMER_RIGHT_5_END_STABILITY=7.3000 PRIMER_PAIR_5_COMPL_ANY=5.00 PRIMER_PAIR_5_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_5=958 PRIMER_PAIR_PENALTY_6=0.1636 PRIMER_LEFT_6_PENALTY=0.055411 PRIMER_RIGHT_6_PENALTY=0.108177 PRIMER_LEFT_6_SEQUENCE=CCTCCCTTATCTTCGATCATCTT PRIMER_RIGHT_6_SEQUENCE=CTGCGCTTCTGCTTTACATAGTT PRIMER_LEFT_6=1004,23 PRIMER_RIGHT_6=1361,23 PRIMER_LEFT_6_TM=59.945 PRIMER_RIGHT_6_TM=60.108 PRIMER_LEFT_6_GC_PERCENT=43.478 PRIMER_RIGHT_6_GC_PERCENT=43.478 PRIMER_LEFT_6_SELF_ANY=5.00 PRIMER_RIGHT_6_SELF_ANY=4.00 PRIMER_LEFT_6_SELF_END=1.00 PRIMER_RIGHT_6_SELF_END=0.00 PRIMER_LEFT_6_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_6_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_6_MISPRIMING_SCORE=21.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_6_END_STABILITY=6.6000 PRIMER_RIGHT_6_END_STABILITY=5.7000 PRIMER_PAIR_6_COMPL_ANY=3.00 PRIMER_PAIR_6_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_6=358 PRIMER_PAIR_PENALTY_7=0.1642 PRIMER_LEFT_7_PENALTY=0.108818 PRIMER_RIGHT_7_PENALTY=0.055411 PRIMER_LEFT_7_SEQUENCE=GAGGAGAATATCTTGCTGGGAGT PRIMER_RIGHT_7_SEQUENCE=AAGATGATCGAAGATAAGGGAGG PRIMER_LEFT_7=436,23 PRIMER_RIGHT_7=1026,23 PRIMER_LEFT_7_TM=60.109 PRIMER_RIGHT_7_TM=59.945 PRIMER_LEFT_7_GC_PERCENT=47.826 PRIMER_RIGHT_7_GC_PERCENT=43.478 PRIMER_LEFT_7_SELF_ANY=4.00 PRIMER_RIGHT_7_SELF_ANY=5.00 PRIMER_LEFT_7_SELF_END=1.00 PRIMER_RIGHT_7_SELF_END=0.00 PRIMER_LEFT_7_MISPRIMING_SCORE=11.00, MER34 a consensus PRIMER_RIGHT_7_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_7_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_7_END_STABILITY=7.6000 PRIMER_RIGHT_7_END_STABILITY=9.4000 PRIMER_PAIR_7_COMPL_ANY=6.00 PRIMER_PAIR_7_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_7=591 PRIMER_PAIR_PENALTY_8=0.1702 PRIMER_LEFT_8_PENALTY=0.081398 PRIMER_RIGHT_8_PENALTY=0.088773 PRIMER_LEFT_8_SEQUENCE=CTGGACCACACCAGTAGTTTCTC PRIMER_RIGHT_8_SEQUENCE=AAATCAAGATGTAAGGGGTCGAT PRIMER_LEFT_8=2791,23 PRIMER_RIGHT_8=3323,23 PRIMER_LEFT_8_TM=60.081 PRIMER_RIGHT_8_TM=60.089 PRIMER_LEFT_8_GC_PERCENT=52.174 PRIMER_RIGHT_8_GC_PERCENT=39.130 PRIMER_LEFT_8_SELF_ANY=5.00 PRIMER_RIGHT_8_SELF_ANY=4.00 PRIMER_LEFT_8_SELF_END=1.00 PRIMER_RIGHT_8_SELF_END=2.00 PRIMER_LEFT_8_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_8_MISPRIMING_SCORE=12.00, MARINER1 Human mariner PRIMER_PAIR_8_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_8_END_STABILITY=6.7000 PRIMER_RIGHT_8_END_STABILITY=8.3000 PRIMER_PAIR_8_COMPL_ANY=4.00 PRIMER_PAIR_8_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_8=533 PRIMER_PAIR_PENALTY_9=0.1965 PRIMER_LEFT_9_PENALTY=0.081398 PRIMER_RIGHT_9_PENALTY=0.115144 PRIMER_LEFT_9_SEQUENCE=CTGGACCACACCAGTAGTTTCTC PRIMER_RIGHT_9_SEQUENCE=GCAAGAAGGAAGATTCACTCAAA PRIMER_LEFT_9=2791,23 PRIMER_RIGHT_9=3124,23 PRIMER_LEFT_9_TM=60.081 PRIMER_RIGHT_9_TM=59.885 PRIMER_LEFT_9_GC_PERCENT=52.174 PRIMER_RIGHT_9_GC_PERCENT=39.130 PRIMER_LEFT_9_SELF_ANY=5.00 PRIMER_RIGHT_9_SELF_ANY=4.00 PRIMER_LEFT_9_SELF_END=1.00 PRIMER_RIGHT_9_SELF_END=1.00 PRIMER_LEFT_9_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_9_MISPRIMING_SCORE=12.00, reverse MER11A a consensus PRIMER_PAIR_9_MISPRIMING_SCORE=21.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_9_END_STABILITY=6.7000 PRIMER_RIGHT_9_END_STABILITY=7.3000 PRIMER_PAIR_9_COMPL_ANY=4.00 PRIMER_PAIR_9_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_9=334 PRIMER_PAIR_PENALTY_10=0.2039 PRIMER_LEFT_10_PENALTY=0.115144 PRIMER_RIGHT_10_PENALTY=0.088773 PRIMER_LEFT_10_SEQUENCE=TTTGAGTGAATCTTCCTTCTTGC PRIMER_RIGHT_10_SEQUENCE=AAATCAAGATGTAAGGGGTCGAT PRIMER_LEFT_10=3102,23 PRIMER_RIGHT_10=3323,23 PRIMER_LEFT_10_TM=59.885 PRIMER_RIGHT_10_TM=60.089 PRIMER_LEFT_10_GC_PERCENT=39.130 PRIMER_RIGHT_10_GC_PERCENT=39.130 PRIMER_LEFT_10_SELF_ANY=4.00 PRIMER_RIGHT_10_SELF_ANY=4.00 PRIMER_LEFT_10_SELF_END=2.00 PRIMER_RIGHT_10_SELF_END=2.00 PRIMER_LEFT_10_MISPRIMING_SCORE=12.00, reverse MER11A a consensus PRIMER_RIGHT_10_MISPRIMING_SCORE=12.00, MARINER1 Human mariner PRIMER_PAIR_10_MISPRIMING_SCORE=20.00, MARINER1 Human mariner PRIMER_LEFT_10_END_STABILITY=8.5000 PRIMER_RIGHT_10_END_STABILITY=8.3000 PRIMER_PAIR_10_COMPL_ANY=7.00 PRIMER_PAIR_10_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_10=222 PRIMER_PAIR_PENALTY_11=0.2148 PRIMER_LEFT_11_PENALTY=0.008181 PRIMER_RIGHT_11_PENALTY=0.206636 PRIMER_LEFT_11_SEQUENCE=CAAAGTCCCTCCTTTTGAAGAAT PRIMER_RIGHT_11_SEQUENCE=GAAGGGCTCTTTAAGTTTTCTGG PRIMER_LEFT_11=2333,23 PRIMER_RIGHT_11=3209,23 PRIMER_LEFT_11_TM=59.992 PRIMER_RIGHT_11_TM=59.793 PRIMER_LEFT_11_GC_PERCENT=39.130 PRIMER_RIGHT_11_GC_PERCENT=43.478 PRIMER_LEFT_11_SELF_ANY=4.00 PRIMER_RIGHT_11_SELF_ANY=6.00 PRIMER_LEFT_11_SELF_END=2.00 PRIMER_RIGHT_11_SELF_END=0.00 PRIMER_LEFT_11_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_11_MISPRIMING_SCORE=12.00, L1MB7 3'-end of L1 repeat (subfamily L1MB7) - a consensus sequence PRIMER_PAIR_11_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_11_END_STABILITY=6.6000 PRIMER_RIGHT_11_END_STABILITY=8.2000 PRIMER_PAIR_11_COMPL_ANY=5.00 PRIMER_PAIR_11_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_11=877 PRIMER_PAIR_PENALTY_12=0.2170 PRIMER_LEFT_12_PENALTY=0.108818 PRIMER_RIGHT_12_PENALTY=0.108177 PRIMER_LEFT_12_SEQUENCE=GAGGAGAATATCTTGCTGGGAGT PRIMER_RIGHT_12_SEQUENCE=CTGCGCTTCTGCTTTACATAGTT PRIMER_LEFT_12=436,23 PRIMER_RIGHT_12=1361,23 PRIMER_LEFT_12_TM=60.109 PRIMER_RIGHT_12_TM=60.108 PRIMER_LEFT_12_GC_PERCENT=47.826 PRIMER_RIGHT_12_GC_PERCENT=43.478 PRIMER_LEFT_12_SELF_ANY=4.00 PRIMER_RIGHT_12_SELF_ANY=4.00 PRIMER_LEFT_12_SELF_END=1.00 PRIMER_RIGHT_12_SELF_END=0.00 PRIMER_LEFT_12_MISPRIMING_SCORE=11.00, MER34 a consensus PRIMER_RIGHT_12_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_12_MISPRIMING_SCORE=23.00, MER34 a consensus PRIMER_LEFT_12_END_STABILITY=7.6000 PRIMER_RIGHT_12_END_STABILITY=5.7000 PRIMER_PAIR_12_COMPL_ANY=5.00 PRIMER_PAIR_12_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_12=926 PRIMER_PAIR_PENALTY_13=0.2174 PRIMER_LEFT_13_PENALTY=0.115144 PRIMER_RIGHT_13_PENALTY=0.102207 PRIMER_LEFT_13_SEQUENCE=TTTGAGTGAATCTTCCTTCTTGC PRIMER_RIGHT_13_SEQUENCE=TGAGAACAACCCATACATTTTCC PRIMER_LEFT_13=3102,23 PRIMER_RIGHT_13=3978,23 PRIMER_LEFT_13_TM=59.885 PRIMER_RIGHT_13_TM=60.102 PRIMER_LEFT_13_GC_PERCENT=39.130 PRIMER_RIGHT_13_GC_PERCENT=39.130 PRIMER_LEFT_13_SELF_ANY=4.00 PRIMER_RIGHT_13_SELF_ANY=3.00 PRIMER_LEFT_13_SELF_END=2.00 PRIMER_RIGHT_13_SELF_END=0.00 PRIMER_LEFT_13_MISPRIMING_SCORE=12.00, reverse MER11A a consensus PRIMER_RIGHT_13_MISPRIMING_SCORE=12.00, L1MA10 3'-end of L1 repeat (subfamily L1MA10) - a consensus sequence PRIMER_PAIR_13_MISPRIMING_SCORE=20.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_13_END_STABILITY=8.5000 PRIMER_RIGHT_13_END_STABILITY=8.5000 PRIMER_PAIR_13_COMPL_ANY=4.00 PRIMER_PAIR_13_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_13=877 PRIMER_PAIR_PENALTY_14=0.2303 PRIMER_LEFT_14_PENALTY=0.122120 PRIMER_RIGHT_14_PENALTY=0.108177 PRIMER_LEFT_14_SEQUENCE=ACTTATCTTGGGACAGATGGACA PRIMER_RIGHT_14_SEQUENCE=CTGCGCTTCTGCTTTACATAGTT PRIMER_LEFT_14=978,23 PRIMER_RIGHT_14=1361,23 PRIMER_LEFT_14_TM=59.878 PRIMER_RIGHT_14_TM=60.108 PRIMER_LEFT_14_GC_PERCENT=43.478 PRIMER_RIGHT_14_GC_PERCENT=43.478 PRIMER_LEFT_14_SELF_ANY=4.00 PRIMER_RIGHT_14_SELF_ANY=4.00 PRIMER_LEFT_14_SELF_END=2.00 PRIMER_RIGHT_14_SELF_END=0.00 PRIMER_LEFT_14_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_14_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_14_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_14_END_STABILITY=7.9000 PRIMER_RIGHT_14_END_STABILITY=5.7000 PRIMER_PAIR_14_COMPL_ANY=4.00 PRIMER_PAIR_14_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_14=384 PRIMER_PAIR_PENALTY_15=0.2309 PRIMER_LEFT_15_PENALTY=0.108818 PRIMER_RIGHT_15_PENALTY=0.122120 PRIMER_LEFT_15_SEQUENCE=GAGGAGAATATCTTGCTGGGAGT PRIMER_RIGHT_15_SEQUENCE=TGTCCATCTGTCCCAAGATAAGT PRIMER_LEFT_15=436,23 PRIMER_RIGHT_15=1000,23 PRIMER_LEFT_15_TM=60.109 PRIMER_RIGHT_15_TM=59.878 PRIMER_LEFT_15_GC_PERCENT=47.826 PRIMER_RIGHT_15_GC_PERCENT=43.478 PRIMER_LEFT_15_SELF_ANY=4.00 PRIMER_RIGHT_15_SELF_ANY=4.00 PRIMER_LEFT_15_SELF_END=1.00 PRIMER_RIGHT_15_SELF_END=1.00 PRIMER_LEFT_15_MISPRIMING_SCORE=11.00, MER34 a consensus PRIMER_RIGHT_15_MISPRIMING_SCORE=12.00, reverse MER41 Medium reiteration sequence MER41 PRIMER_PAIR_15_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_15_END_STABILITY=7.6000 PRIMER_RIGHT_15_END_STABILITY=5.7000 PRIMER_PAIR_15_COMPL_ANY=7.00 PRIMER_PAIR_15_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_15=565 PRIMER_PAIR_PENALTY_16=0.2325 PRIMER_LEFT_16_PENALTY=0.151103 PRIMER_RIGHT_16_PENALTY=0.081398 PRIMER_LEFT_16_SEQUENCE=ATCGTCACCCAAGAAAGATATGA PRIMER_RIGHT_16_SEQUENCE=GAGAAACTACTGGTGTGGTCCAG PRIMER_LEFT_16=2406,23 PRIMER_RIGHT_16=2813,23 PRIMER_LEFT_16_TM=59.849 PRIMER_RIGHT_16_TM=60.081 PRIMER_LEFT_16_GC_PERCENT=39.130 PRIMER_RIGHT_16_GC_PERCENT=52.174 PRIMER_LEFT_16_SELF_ANY=4.00 PRIMER_RIGHT_16_SELF_ANY=5.00 PRIMER_LEFT_16_SELF_END=1.00 PRIMER_RIGHT_16_SELF_END=3.00 PRIMER_LEFT_16_MISPRIMING_SCORE=12.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_16_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_16_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_16_END_STABILITY=5.9000 PRIMER_RIGHT_16_END_STABILITY=8.2000 PRIMER_PAIR_16_COMPL_ANY=4.00 PRIMER_PAIR_16_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_16=408 PRIMER_PAIR_PENALTY_17=0.2399 PRIMER_LEFT_17_PENALTY=0.151103 PRIMER_RIGHT_17_PENALTY=0.088773 PRIMER_LEFT_17_SEQUENCE=ATCGTCACCCAAGAAAGATATGA PRIMER_RIGHT_17_SEQUENCE=AAATCAAGATGTAAGGGGTCGAT PRIMER_LEFT_17=2406,23 PRIMER_RIGHT_17=3323,23 PRIMER_LEFT_17_TM=59.849 PRIMER_RIGHT_17_TM=60.089 PRIMER_LEFT_17_GC_PERCENT=39.130 PRIMER_RIGHT_17_GC_PERCENT=39.130 PRIMER_LEFT_17_SELF_ANY=4.00 PRIMER_RIGHT_17_SELF_ANY=4.00 PRIMER_LEFT_17_SELF_END=1.00 PRIMER_RIGHT_17_SELF_END=2.00 PRIMER_LEFT_17_MISPRIMING_SCORE=12.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_17_MISPRIMING_SCORE=12.00, MARINER1 Human mariner PRIMER_PAIR_17_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_17_END_STABILITY=5.9000 PRIMER_RIGHT_17_END_STABILITY=8.3000 PRIMER_PAIR_17_COMPL_ANY=5.00 PRIMER_PAIR_17_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_17=918 PRIMER_PAIR_PENALTY_18=0.2662 PRIMER_LEFT_18_PENALTY=0.151103 PRIMER_RIGHT_18_PENALTY=0.115144 PRIMER_LEFT_18_SEQUENCE=ATCGTCACCCAAGAAAGATATGA PRIMER_RIGHT_18_SEQUENCE=GCAAGAAGGAAGATTCACTCAAA PRIMER_LEFT_18=2406,23 PRIMER_RIGHT_18=3124,23 PRIMER_LEFT_18_TM=59.849 PRIMER_RIGHT_18_TM=59.885 PRIMER_LEFT_18_GC_PERCENT=39.130 PRIMER_RIGHT_18_GC_PERCENT=39.130 PRIMER_LEFT_18_SELF_ANY=4.00 PRIMER_RIGHT_18_SELF_ANY=4.00 PRIMER_LEFT_18_SELF_END=1.00 PRIMER_RIGHT_18_SELF_END=1.00 PRIMER_LEFT_18_MISPRIMING_SCORE=12.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_18_MISPRIMING_SCORE=12.00, reverse MER11A a consensus PRIMER_PAIR_18_MISPRIMING_SCORE=21.00, MLT1R MLT1-Mammalian LTR retrotransposon internal sequence - a consensus PRIMER_LEFT_18_END_STABILITY=5.9000 PRIMER_RIGHT_18_END_STABILITY=7.3000 PRIMER_PAIR_18_COMPL_ANY=4.00 PRIMER_PAIR_18_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_18=719 PRIMER_PAIR_PENALTY_19=0.2745 PRIMER_LEFT_19_PENALTY=0.166336 PRIMER_RIGHT_19_PENALTY=0.108177 PRIMER_LEFT_19_SEQUENCE=GATCATCTTTATCTCGGCTCTGA PRIMER_RIGHT_19_SEQUENCE=CTGCGCTTCTGCTTTACATAGTT PRIMER_LEFT_19=1018,23 PRIMER_RIGHT_19=1361,23 PRIMER_LEFT_19_TM=59.834 PRIMER_RIGHT_19_TM=60.108 PRIMER_LEFT_19_GC_PERCENT=43.478 PRIMER_RIGHT_19_GC_PERCENT=43.478 PRIMER_LEFT_19_SELF_ANY=5.00 PRIMER_RIGHT_19_SELF_ANY=4.00 PRIMER_LEFT_19_SELF_END=3.00 PRIMER_RIGHT_19_SELF_END=0.00 PRIMER_LEFT_19_MISPRIMING_SCORE=12.00, reverse L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_RIGHT_19_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_19_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_19_END_STABILITY=6.7000 PRIMER_RIGHT_19_END_STABILITY=5.7000 PRIMER_PAIR_19_COMPL_ANY=3.00 PRIMER_PAIR_19_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_19=344 =