PRIMER_SEQUENCE_ID=NM_201278 SEQUENCE=TGCACTCTGGGGGAACATGGCCGCTTCCGGTCTCCCTCCCGGGCCGGCGCTGGCCTGACTGCGGCCCCGGTCCGTAGCACTCCGCCCTCCGCTTCTCCCGCCCTGTAGCCGCGAAGACTGCTTCAGCCTTTCCCTGTGCTGCCCCTGCCGCGCGATGGAGAAGAGCTCGAGCTGCGAGAGTCTTGGCTCCCAGCCGGCGGCGGCTCGGCCGCCCAGCGTGGACTCCTTGTCCAGTTAATGTGTTAAGAGCCATTGACATTTGAAGATCATCAGAAGTGAAGATAAAACATCTCAAAAATTATAATTGCCTCCACTTCTCATTCAGAGAATTCAGTGCATACAAAATCAGCTTCTGTTGTATCATCAGATTCCATTTCAACTTCTGCCGACAACTTTTCTCCTGATTTGAGGAGGGAGTCTCGCTCTATCCCCTAGGCTGGAGTGCATTGGCGCCATCTCGGCTCATTTGCAACCTCTGTCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCGAGGAGCTGGGATTACAGGTCCTGAGGGAGTCTAACAAGTTAGCAGAAATGGAAGAACCACCCTTGCTTCCAGGAGAAAATATTAAAGACATGGCCAAAGATGTAACTTATATATGTCCATTCACTGGCGCTGTACGAGGAACTCTGACTGTCACGAATTATAGGTTATATTTCAAAAGCATGGAACGGGATCCCCCATTTGTTTTAGATGCTTCCCTTGGTGTGATAAATAGAGTAGAAAAAATTGGTGGTGCTTCTAGTCGAGGTGAAAATTCTTATGGACTAGAAACTGTGTGTAAGGATATTAGGAATTTACGATTTGCTCATAAACCTGAGGGGCGGACAAGAAGATCCATATTTGAGAATCTAATGAAATATGCATTTCCTGTCTCTAATAACCTGCCTCTTTTTGCTTTTGAATACAAAGAAGTATTCCCTGAAAATGGGTGGAAGCTATATGACCCTCTTTTAGAGTATAGAAGGCAGGGAATTCCAAATGAAAGCTGGAGAATAACAAAGATAAATGAACGATATGAACTTTGTGATACATACCCTGCCCTCCTGGTTGTGCCAGCAAATATTCCTGATGAAGAATTAAAGAGAGTGGCATCCTTCAGATCAAGAGGCCGTATCCCAGTTTTATCATGGATTCATCCTGAAAGTCAAGCCACAATCACTCGGTGTAGCCAGCCCATGGTTGGAGTGAGTGGAAAGCGAAGCAAAGAAGATGAAAAATACCTTCAAGCTATCATGGATTCCAATGCCCAGTCTCACAAAATCTTTATATTTGATGCCCGGCCAAGTGTTAATGCTGTTGCCAACAAGGCAAAGGGTGGAGGTTATGAAAGTGAAGATGCCTATCAAAATGCTGAACTAGTTTTCCTGGATATCCACAATATTCATGTTATGAGAGAATCATTACGAAAACTTAAGGAGATTGTGTACCCCAACATTGAGGAAACCCACTGGTTGTCTAACTTGGAATCTACTCATTGGCTAGAACATATTAAGCTTATTCTTGCAGGGGCTCTTAGGATTGCTGACAAGGTAGAGTCAGGGAAGACGTCTGTGGTAGTGCATTGCAGTGATGGTTGGGATCGCACAGCTCAGCTCACTTCCCTTGCCATGCTCATGTTGGATGGATACTATCGAACCATCCGAGGATTTGAAGTCCTTGTGGAGAAAGAATGGCTAAGTTTTGGACATCGATTTCAACTAAGAGTTGGCCATGGAGATAAGAACCATGCAGATGCAGACAGATCGCCTGTTTTTCTTCAATTTATTGACTGTGTCTGGCAGATGACAAGACAGTTTCCTACCGCATTTGAATTCAATGAGTATTTTCTCATTACCATTTTGGACCACCTATACAGCTGCTTATTCGGAACATTCCTCTGTAATAGTGAACAACAGAGAGGAAAAGAGAATCTTCCTAAAAGGACTGTGTCACTGTGGTCTTACATAAACAGCCAGCTGGAAGACTTCACTAATCCTCTCTATGGGAGCTATTCCAATCATGTCCTTTATCCAGTAGCCAGCATGCGCCACCTAGAGCTCTGGGTGGGATATTACATAAGGTGGAATCCACGGATGAAACCACAGGAACCTATTCACAACAGATACAAAGAACTTCTTGCTAAACGAGCAGAGCTTCAGAAAAAAGTAGAGGAACTACAGAGAGAGATTTCTAACCGATCAACCTCATCCTCAGAGAGAGCCAGCTCTCCTGCACAGTGTGTCACTCCTGTCCAAACTGTTGTATAAAGGACTGTAAGATCAGGGGCATCATTGCTATACACTCTTGATTACACTGGCAGCTCTATGAGTAGAAAGTCTTCGGAATTTAGAACCCATCTATGAGAGAAAGTTCAGTCACTTTATTTATTTTAAATCTCTCTAGGATGAGTTTAGAACTGTAGCAGTGCAGGTGGCTTAAGTGAAGTAACTCCATATGTAATTACATGATTATGATACTAATCTTTTAAGTATCCAAAGAATATTAAAATACTTCAATCCTGGATTCACAGTGGGAACAAGTTTCTATTAAAAGGCAAATGCTGTTACAAATTTTTGGCATCTGGTAATATTAAAACCATTTTAGAAATACACTCTGTGCTCACTGTGCAGAGGAACATCAGTTTTCAAACCAACACTGAAATTCTGTGGCATCACATATATTGGGCCTTGATGTCATGACAGATCAAAATCATTTGATATCCCTTTCTCCATTCTAGGTTTTTCTTTTTTTCAGTAACTGATTTACCTTGATCACTTTTCAACTTCCATATTCTTCATATAGTAAAAGGCAAAGTGTTGAAGATACTACGGTGTGGTAGTAGTTGAAAATTATTGCCGTCATTATTTACATACTTAAGACATATTAGCAAGTTGATCCAAAATGGGAGGCCTTATAGATGTGCTTGGGGGAAAATGAAGGGGAGAAAGTAGCCATACAGGAGTTCAAAGAATTCCATGCCCTTCAGATTAGCCCAATTACCAGAAACATCATGAAAGATATTTTAAAAACTAATTATTTACTACAGTGTATTTCACTTGTCTTGTGTGTCTGAACACACAGAAGCTAATTAGCAAGTTTTTAAGAAGTATTTAAAAATCTTACTAGGATTGACATTTTTTCTGAATTCTGTATAAATAGCTTATAGTGAGAAGTACTGTGCTCAAATTTTACATTTTTTTCCTTTGCAAATTCTGTAATTTCACTCAACGATTAAGTCTACCAAAGAACACACTGCATGTAAAAGATGTATTACAATCTCAAAGCCAGTAAAAGAAATCTTGCTTCACTGTTCACCTGCTACAAGTAAGAGTTTGGTGCTGGTAGAAACATTTGACTCTGATGTCTATTTTATTCTACATAAGAGCCATATGTAATGTACTGTAACAAAGGAGCTTCTTGTCCCCTTGGTCTTTTAATTAAAAGAAATTCCAACTGACTTTTAAACTTTGTTCTTGTCCAAAGTTGCCATTTCTTTTTTTTCCCCAGAAATATTTGGAAATTATTGGAGGAATATGCACCCCAGATGAAAATGTTCAGTTTGTACCCATTTTTCCTTAACCAACACCCAAATCAAACAATTAAAATATACAGTGTTTTTCCACTCACTAATTCACTATACAGAGAGTCTGAACCTTAGCCTCCCTCTTGGTCTTGCAGTGAGGAAGTTTCTATTAGTATATCCAATTTAGCAAAATTGGTACCAAAATGATTTCTTTGGTAATTGTGTGAAATATAAGCTTTTTAACAGGGCATTTAAGTGGCTAGCAAATCAGTAATTAAAAATTAAGCTTTCTACTCCAAGTATTTCACAAACGCATCTGCCATTTTCCTCATTTAAACCTTGGTTATCTTGGCCTGATACCACATAAAAGAATGTAGAATGGCTGAAGAGATCAAGAATTTAAAGCTTCTAGTCTTAACATACTTGCATCCACTTCAAATTCAAATCAAAAGCCAGGGAAATCTAAGTGCAACCCTACCACTTCTCTGCTGAGAACCTTCCAGTGGTTCCCCTCACCTTCTGCAGAAGTCTCCAATATGGAGTACATGCACTTGGGCATTTAATATATACCACTGGTGTGTGTGGGAGGGAGGGAGGAGGAATACTAGCCCTTTTTATATATTTACACAAGCAAAACTTTTAAATATTTGAATTGACAGTTACATGTTTCATAACTTTGTATGTCTATTGGTTGTGCAGGTGTAATTTTTTCCCTTTTTGATTAGGGTTACAAAATTTAGAGACCAGTATGATTAAGTTGAAGCTCCTTAGCCTCCTTCGACCTAGTCTCTGCATACCTCAACTTTTACGTACCAATGCTACTCTGCTGTTCACAATTGCCTCATGTAATCTGCAGATTCCTGCCTCCCCACTTTGGTTCAGTCTGTCTTGTGCACCTGGAACAACTGTTCTCCCTTGTGACTAATTCCTATTTTCTAGAGTTTAGGCATCATCTCTTCCTTTGGGAAGTTATCTGATTCACGACTGCCTTCTCTGACATCCCCACCTTCCTCTGTGCCCCCATAGCACTGTGTATACCGCTACTACCACTGCAATTCACATTATATTGGAATGAACAATTCACATGTCTACCACAAGTCTGTAAACATAACCTTATTTGAAATGAATTGCAATAAAGCTCTGTTACAACGT PRIMER_OPT_SIZE=23 PRIMER_MIN_SIZE=15 PRIMER_MAX_SIZE=26 PRIMER_MISPRIMING_LIBRARY=Human_rep_in_fasta.txt PRIMER_NUM_RETURN=20 PRIMER_NUM_NS_ACCEPTED=1 PRIMER_PRODUCT_SIZE_RANGE=100-999 PRIMER_EXPLAIN_FLAG=1 PRIMER_LEFT_EXPLAIN=considered 53899, GC content failed 2638, low tm 30946, high tm 9100, high any compl 14, high end compl 53, high repeat similarity 41, long poly-x seq 150, ok 10957 PRIMER_RIGHT_EXPLAIN=considered 53936, GC content failed 2441, low tm 31666, high tm 8537, high any compl 3, high end compl 12, high repeat similarity 11, long poly-x seq 151, ok 11115 PRIMER_PAIR_EXPLAIN=considered 1400, unacceptable product size 1336, high end compl 8, ok 56 PRIMER_PAIR_PENALTY=0.0513 PRIMER_LEFT_PENALTY=0.028128 PRIMER_RIGHT_PENALTY=0.023182 PRIMER_LEFT_SEQUENCE=CATGTCCTTTATCCAGTAGCCAG PRIMER_RIGHT_SEQUENCE=TCTGGTAATTGGGCTAATCTGAA PRIMER_LEFT=2031,23 PRIMER_RIGHT=3016,23 PRIMER_LEFT_TM=60.028 PRIMER_RIGHT_TM=59.977 PRIMER_LEFT_GC_PERCENT=47.826 PRIMER_RIGHT_GC_PERCENT=39.130 PRIMER_LEFT_SELF_ANY=4.00 PRIMER_RIGHT_SELF_ANY=5.00 PRIMER_LEFT_SELF_END=1.00 PRIMER_RIGHT_SELF_END=1.00 PRIMER_LEFT_MISPRIMING_SCORE=11.00, THE1b consensus sequence PRIMER_RIGHT_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_MISPRIMING_SCORE=22.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_END_STABILITY=9.7000 PRIMER_RIGHT_END_STABILITY=7.0000 PRIMER_PAIR_COMPL_ANY=5.00 PRIMER_PAIR_COMPL_END=2.00 PRIMER_PRODUCT_SIZE=986 PRIMER_PAIR_PENALTY_1=0.0598 PRIMER_LEFT_1_PENALTY=0.036623 PRIMER_RIGHT_1_PENALTY=0.023182 PRIMER_LEFT_1_SEQUENCE=ACTCTTGATTACACTGGCAGCTC PRIMER_RIGHT_1_SEQUENCE=TCTGGTAATTGGGCTAATCTGAA PRIMER_LEFT_1=2313,23 PRIMER_RIGHT_1=3016,23 PRIMER_LEFT_1_TM=59.963 PRIMER_RIGHT_1_TM=59.977 PRIMER_LEFT_1_GC_PERCENT=47.826 PRIMER_RIGHT_1_GC_PERCENT=39.130 PRIMER_LEFT_1_SELF_ANY=5.00 PRIMER_RIGHT_1_SELF_ANY=5.00 PRIMER_LEFT_1_SELF_END=2.00 PRIMER_RIGHT_1_SELF_END=1.00 PRIMER_LEFT_1_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_1_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_1_MISPRIMING_SCORE=24.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_1_END_STABILITY=7.9000 PRIMER_RIGHT_1_END_STABILITY=7.0000 PRIMER_PAIR_1_COMPL_ANY=5.00 PRIMER_PAIR_1_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_1=704 PRIMER_PAIR_PENALTY_2=0.0648 PRIMER_LEFT_2_PENALTY=0.028128 PRIMER_RIGHT_2_PENALTY=0.036623 PRIMER_LEFT_2_SEQUENCE=CATGTCCTTTATCCAGTAGCCAG PRIMER_RIGHT_2_SEQUENCE=GAGCTGCCAGTGTAATCAAGAGT PRIMER_LEFT_2=2031,23 PRIMER_RIGHT_2=2335,23 PRIMER_LEFT_2_TM=60.028 PRIMER_RIGHT_2_TM=59.963 PRIMER_LEFT_2_GC_PERCENT=47.826 PRIMER_RIGHT_2_GC_PERCENT=47.826 PRIMER_LEFT_2_SELF_ANY=4.00 PRIMER_RIGHT_2_SELF_ANY=5.00 PRIMER_LEFT_2_SELF_END=1.00 PRIMER_RIGHT_2_SELF_END=2.00 PRIMER_LEFT_2_MISPRIMING_SCORE=11.00, THE1b consensus sequence PRIMER_RIGHT_2_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_2_MISPRIMING_SCORE=22.00, HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_2_END_STABILITY=9.7000 PRIMER_RIGHT_2_END_STABILITY=6.1000 PRIMER_PAIR_2_COMPL_ANY=4.00 PRIMER_PAIR_2_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_2=305 PRIMER_PAIR_PENALTY_3=0.0769 PRIMER_LEFT_3_PENALTY=0.066354 PRIMER_RIGHT_3_PENALTY=0.010529 PRIMER_LEFT_3_SEQUENCE=TGTATGTCTATTGGTTGTGCAGG PRIMER_RIGHT_3_SEQUENCE=CAGATTACATGAGGCAATTGTGA PRIMER_LEFT_3=4213,23 PRIMER_RIGHT_3=4388,23 PRIMER_LEFT_3_TM=59.934 PRIMER_RIGHT_3_TM=60.011 PRIMER_LEFT_3_GC_PERCENT=43.478 PRIMER_RIGHT_3_GC_PERCENT=39.130 PRIMER_LEFT_3_SELF_ANY=4.00 PRIMER_RIGHT_3_SELF_ANY=6.00 PRIMER_LEFT_3_SELF_END=0.00 PRIMER_RIGHT_3_SELF_END=1.00 PRIMER_LEFT_3_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_3_MISPRIMING_SCORE=12.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_PAIR_3_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_3_END_STABILITY=9.7000 PRIMER_RIGHT_3_END_STABILITY=6.7000 PRIMER_PAIR_3_COMPL_ANY=4.00 PRIMER_PAIR_3_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_3=176 PRIMER_PAIR_PENALTY_4=0.0793 PRIMER_LEFT_4_PENALTY=0.028128 PRIMER_RIGHT_4_PENALTY=0.051149 PRIMER_LEFT_4_SEQUENCE=CATGTCCTTTATCCAGTAGCCAG PRIMER_RIGHT_4_SEQUENCE=CATCAAGGCCCAATATATGTGAT PRIMER_LEFT_4=2031,23 PRIMER_RIGHT_4=2705,23 PRIMER_LEFT_4_TM=60.028 PRIMER_RIGHT_4_TM=59.949 PRIMER_LEFT_4_GC_PERCENT=47.826 PRIMER_RIGHT_4_GC_PERCENT=39.130 PRIMER_LEFT_4_SELF_ANY=4.00 PRIMER_RIGHT_4_SELF_ANY=6.00 PRIMER_LEFT_4_SELF_END=1.00 PRIMER_RIGHT_4_SELF_END=2.00 PRIMER_LEFT_4_MISPRIMING_SCORE=11.00, THE1b consensus sequence PRIMER_RIGHT_4_MISPRIMING_SCORE=12.00, reverse MER1A Nonautonomous DNA transposon PRIMER_PAIR_4_MISPRIMING_SCORE=21.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_4_END_STABILITY=9.7000 PRIMER_RIGHT_4_END_STABILITY=6.3000 PRIMER_PAIR_4_COMPL_ANY=5.00 PRIMER_PAIR_4_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_4=675 PRIMER_PAIR_PENALTY_5=0.0836 PRIMER_LEFT_5_PENALTY=0.046971 PRIMER_RIGHT_5_PENALTY=0.036623 PRIMER_LEFT_5_SEQUENCE=GATGACAAGACAGTTTCCTACCG PRIMER_RIGHT_5_SEQUENCE=GAGCTGCCAGTGTAATCAAGAGT PRIMER_LEFT_5=1814,23 PRIMER_RIGHT_5=2335,23 PRIMER_LEFT_5_TM=60.047 PRIMER_RIGHT_5_TM=59.963 PRIMER_LEFT_5_GC_PERCENT=47.826 PRIMER_RIGHT_5_GC_PERCENT=47.826 PRIMER_LEFT_5_SELF_ANY=3.00 PRIMER_RIGHT_5_SELF_ANY=5.00 PRIMER_LEFT_5_SELF_END=2.00 PRIMER_RIGHT_5_SELF_END=2.00 PRIMER_LEFT_5_MISPRIMING_SCORE=10.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_5_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_5_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_5_END_STABILITY=8.9000 PRIMER_RIGHT_5_END_STABILITY=6.1000 PRIMER_PAIR_5_COMPL_ANY=5.00 PRIMER_PAIR_5_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_5=522 PRIMER_PAIR_PENALTY_6=0.0878 PRIMER_LEFT_6_PENALTY=0.036623 PRIMER_RIGHT_6_PENALTY=0.051149 PRIMER_LEFT_6_SEQUENCE=ACTCTTGATTACACTGGCAGCTC PRIMER_RIGHT_6_SEQUENCE=CATCAAGGCCCAATATATGTGAT PRIMER_LEFT_6=2313,23 PRIMER_RIGHT_6=2705,23 PRIMER_LEFT_6_TM=59.963 PRIMER_RIGHT_6_TM=59.949 PRIMER_LEFT_6_GC_PERCENT=47.826 PRIMER_RIGHT_6_GC_PERCENT=39.130 PRIMER_LEFT_6_SELF_ANY=5.00 PRIMER_RIGHT_6_SELF_ANY=6.00 PRIMER_LEFT_6_SELF_END=2.00 PRIMER_RIGHT_6_SELF_END=2.00 PRIMER_LEFT_6_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_6_MISPRIMING_SCORE=12.00, reverse MER1A Nonautonomous DNA transposon PRIMER_PAIR_6_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_6_END_STABILITY=7.9000 PRIMER_RIGHT_6_END_STABILITY=6.3000 PRIMER_PAIR_6_COMPL_ANY=6.00 PRIMER_PAIR_6_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_6=393 PRIMER_PAIR_PENALTY_7=0.0949 PRIMER_LEFT_7_PENALTY=0.012680 PRIMER_RIGHT_7_PENALTY=0.082173 PRIMER_LEFT_7_SEQUENCE=GATTACAGGTCCTGAGGGAGTCT PRIMER_RIGHT_7_SEQUENCE=TTATTCTCCAGCTTTCATTTGGA PRIMER_LEFT_7=526,23 PRIMER_RIGHT_7=1029,23 PRIMER_LEFT_7_TM=60.013 PRIMER_RIGHT_7_TM=60.082 PRIMER_LEFT_7_GC_PERCENT=52.174 PRIMER_RIGHT_7_GC_PERCENT=34.783 PRIMER_LEFT_7_SELF_ANY=7.00 PRIMER_RIGHT_7_SELF_ANY=4.00 PRIMER_LEFT_7_SELF_END=3.00 PRIMER_RIGHT_7_SELF_END=3.00 PRIMER_LEFT_7_MISPRIMING_SCORE=12.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_RIGHT_7_MISPRIMING_SCORE=12.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_PAIR_7_MISPRIMING_SCORE=24.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_LEFT_7_END_STABILITY=6.1000 PRIMER_RIGHT_7_END_STABILITY=8.5000 PRIMER_PAIR_7_COMPL_ANY=4.00 PRIMER_PAIR_7_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_7=504 PRIMER_PAIR_PENALTY_8=0.0981 PRIMER_LEFT_8_PENALTY=0.046971 PRIMER_RIGHT_8_PENALTY=0.051149 PRIMER_LEFT_8_SEQUENCE=GATGACAAGACAGTTTCCTACCG PRIMER_RIGHT_8_SEQUENCE=CATCAAGGCCCAATATATGTGAT PRIMER_LEFT_8=1814,23 PRIMER_RIGHT_8=2705,23 PRIMER_LEFT_8_TM=60.047 PRIMER_RIGHT_8_TM=59.949 PRIMER_LEFT_8_GC_PERCENT=47.826 PRIMER_RIGHT_8_GC_PERCENT=39.130 PRIMER_LEFT_8_SELF_ANY=3.00 PRIMER_RIGHT_8_SELF_ANY=6.00 PRIMER_LEFT_8_SELF_END=2.00 PRIMER_RIGHT_8_SELF_END=2.00 PRIMER_LEFT_8_MISPRIMING_SCORE=10.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_8_MISPRIMING_SCORE=12.00, reverse MER1A Nonautonomous DNA transposon PRIMER_PAIR_8_MISPRIMING_SCORE=21.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_8_END_STABILITY=8.9000 PRIMER_RIGHT_8_END_STABILITY=6.3000 PRIMER_PAIR_8_COMPL_ANY=4.00 PRIMER_PAIR_8_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_8=892 PRIMER_PAIR_PENALTY_9=0.0982 PRIMER_LEFT_9_PENALTY=0.085505 PRIMER_RIGHT_9_PENALTY=0.012680 PRIMER_LEFT_9_SEQUENCE=GGACTCCTTGTCCAGTTAATGTG PRIMER_RIGHT_9_SEQUENCE=AGACTCCCTCAGGACCTGTAATC PRIMER_LEFT_9=219,23 PRIMER_RIGHT_9=548,23 PRIMER_LEFT_9_TM=59.914 PRIMER_RIGHT_9_TM=60.013 PRIMER_LEFT_9_GC_PERCENT=47.826 PRIMER_RIGHT_9_GC_PERCENT=52.174 PRIMER_LEFT_9_SELF_ANY=5.00 PRIMER_RIGHT_9_SELF_ANY=7.00 PRIMER_LEFT_9_SELF_END=2.00 PRIMER_RIGHT_9_SELF_END=0.00 PRIMER_LEFT_9_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_9_MISPRIMING_SCORE=11.00, L1MC2 3'-end of L1 repeat (subfamily L1MC2) - a consensus sequence PRIMER_PAIR_9_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_9_END_STABILITY=6.6000 PRIMER_RIGHT_9_END_STABILITY=5.9000 PRIMER_PAIR_9_COMPL_ANY=4.00 PRIMER_PAIR_9_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_9=330 PRIMER_PAIR_PENALTY_10=0.0982 PRIMER_LEFT_10_PENALTY=0.085505 PRIMER_RIGHT_10_PENALTY=0.012680 PRIMER_LEFT_10_SEQUENCE=TGGACTCCTTGTCCAGTTAATGT PRIMER_RIGHT_10_SEQUENCE=AGACTCCCTCAGGACCTGTAATC PRIMER_LEFT_10=218,23 PRIMER_RIGHT_10=548,23 PRIMER_LEFT_10_TM=59.914 PRIMER_RIGHT_10_TM=60.013 PRIMER_LEFT_10_GC_PERCENT=43.478 PRIMER_RIGHT_10_GC_PERCENT=52.174 PRIMER_LEFT_10_SELF_ANY=5.00 PRIMER_RIGHT_10_SELF_ANY=7.00 PRIMER_LEFT_10_SELF_END=2.00 PRIMER_RIGHT_10_SELF_END=0.00 PRIMER_LEFT_10_MISPRIMING_SCORE=11.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_RIGHT_10_MISPRIMING_SCORE=11.00, L1MC2 3'-end of L1 repeat (subfamily L1MC2) - a consensus sequence PRIMER_PAIR_10_MISPRIMING_SCORE=20.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_10_END_STABILITY=6.6000 PRIMER_RIGHT_10_END_STABILITY=5.9000 PRIMER_PAIR_10_COMPL_ANY=4.00 PRIMER_PAIR_10_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_10=331 PRIMER_PAIR_PENALTY_11=0.1038 PRIMER_LEFT_11_PENALTY=0.085505 PRIMER_RIGHT_11_PENALTY=0.018314 PRIMER_LEFT_11_SEQUENCE=GGACTCCTTGTCCAGTTAATGTG PRIMER_RIGHT_11_SEQUENCE=AATATTTTCTCCTGGAAGCAAGG PRIMER_LEFT_11=219,23 PRIMER_RIGHT_11=599,23 PRIMER_LEFT_11_TM=59.914 PRIMER_RIGHT_11_TM=59.982 PRIMER_LEFT_11_GC_PERCENT=47.826 PRIMER_RIGHT_11_GC_PERCENT=39.130 PRIMER_LEFT_11_SELF_ANY=5.00 PRIMER_RIGHT_11_SELF_ANY=6.00 PRIMER_LEFT_11_SELF_END=2.00 PRIMER_RIGHT_11_SELF_END=3.00 PRIMER_LEFT_11_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_11_MISPRIMING_SCORE=10.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_PAIR_11_MISPRIMING_SCORE=21.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_11_END_STABILITY=6.6000 PRIMER_RIGHT_11_END_STABILITY=8.5000 PRIMER_PAIR_11_COMPL_ANY=6.00 PRIMER_PAIR_11_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_11=381 PRIMER_PAIR_PENALTY_12=0.1038 PRIMER_LEFT_12_PENALTY=0.085505 PRIMER_RIGHT_12_PENALTY=0.018314 PRIMER_LEFT_12_SEQUENCE=TGGACTCCTTGTCCAGTTAATGT PRIMER_RIGHT_12_SEQUENCE=AATATTTTCTCCTGGAAGCAAGG PRIMER_LEFT_12=218,23 PRIMER_RIGHT_12=599,23 PRIMER_LEFT_12_TM=59.914 PRIMER_RIGHT_12_TM=59.982 PRIMER_LEFT_12_GC_PERCENT=43.478 PRIMER_RIGHT_12_GC_PERCENT=39.130 PRIMER_LEFT_12_SELF_ANY=5.00 PRIMER_RIGHT_12_SELF_ANY=6.00 PRIMER_LEFT_12_SELF_END=2.00 PRIMER_RIGHT_12_SELF_END=3.00 PRIMER_LEFT_12_MISPRIMING_SCORE=11.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_RIGHT_12_MISPRIMING_SCORE=10.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_PAIR_12_MISPRIMING_SCORE=21.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_12_END_STABILITY=6.6000 PRIMER_RIGHT_12_END_STABILITY=8.5000 PRIMER_PAIR_12_COMPL_ANY=6.00 PRIMER_PAIR_12_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_12=382 PRIMER_PAIR_PENALTY_13=0.1096 PRIMER_LEFT_13_PENALTY=0.028128 PRIMER_RIGHT_13_PENALTY=0.081493 PRIMER_LEFT_13_SEQUENCE=CATGTCCTTTATCCAGTAGCCAG PRIMER_RIGHT_13_SEQUENCE=TCATAGAGCTGCCAGTGTAATCA PRIMER_LEFT_13=2031,23 PRIMER_RIGHT_13=2340,23 PRIMER_LEFT_13_TM=60.028 PRIMER_RIGHT_13_TM=59.919 PRIMER_LEFT_13_GC_PERCENT=47.826 PRIMER_RIGHT_13_GC_PERCENT=43.478 PRIMER_LEFT_13_SELF_ANY=4.00 PRIMER_RIGHT_13_SELF_ANY=5.00 PRIMER_LEFT_13_SELF_END=1.00 PRIMER_RIGHT_13_SELF_END=3.00 PRIMER_LEFT_13_MISPRIMING_SCORE=11.00, THE1b consensus sequence PRIMER_RIGHT_13_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_13_MISPRIMING_SCORE=22.00, HSATI Human satellite I DNA HinfI fragment PRIMER_LEFT_13_END_STABILITY=9.7000 PRIMER_RIGHT_13_END_STABILITY=6.9000 PRIMER_PAIR_13_COMPL_ANY=4.00 PRIMER_PAIR_13_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_13=310 PRIMER_PAIR_PENALTY_14=0.1118 PRIMER_LEFT_14_PENALTY=0.088604 PRIMER_RIGHT_14_PENALTY=0.023182 PRIMER_LEFT_14_SEQUENCE=CTCTTGATTACACTGGCAGCTCT PRIMER_RIGHT_14_SEQUENCE=TCTGGTAATTGGGCTAATCTGAA PRIMER_LEFT_14=2314,23 PRIMER_RIGHT_14=3016,23 PRIMER_LEFT_14_TM=60.089 PRIMER_RIGHT_14_TM=59.977 PRIMER_LEFT_14_GC_PERCENT=47.826 PRIMER_RIGHT_14_GC_PERCENT=39.130 PRIMER_LEFT_14_SELF_ANY=5.00 PRIMER_RIGHT_14_SELF_ANY=5.00 PRIMER_LEFT_14_SELF_END=3.00 PRIMER_RIGHT_14_SELF_END=1.00 PRIMER_LEFT_14_MISPRIMING_SCORE=12.00, reverse L1MA2 3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence PRIMER_RIGHT_14_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_14_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_14_END_STABILITY=7.9000 PRIMER_RIGHT_14_END_STABILITY=7.0000 PRIMER_PAIR_14_COMPL_ANY=5.00 PRIMER_PAIR_14_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_14=703 PRIMER_PAIR_PENALTY_15=0.1153 PRIMER_LEFT_15_PENALTY=0.066354 PRIMER_RIGHT_15_PENALTY=0.048962 PRIMER_LEFT_15_SEQUENCE=TGTATGTCTATTGGTTGTGCAGG PRIMER_RIGHT_15_SEQUENCE=AGAGACTAGGTCGAAGGAGGCTA PRIMER_LEFT_15=4213,23 PRIMER_RIGHT_15=4326,23 PRIMER_LEFT_15_TM=59.934 PRIMER_RIGHT_15_TM=60.049 PRIMER_LEFT_15_GC_PERCENT=43.478 PRIMER_RIGHT_15_GC_PERCENT=52.174 PRIMER_LEFT_15_SELF_ANY=4.00 PRIMER_RIGHT_15_SELF_ANY=4.00 PRIMER_LEFT_15_SELF_END=0.00 PRIMER_RIGHT_15_SELF_END=2.00 PRIMER_LEFT_15_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_15_MISPRIMING_SCORE=11.00, MER7A Nonautonomous DNA transposon PRIMER_PAIR_15_MISPRIMING_SCORE=20.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_15_END_STABILITY=9.7000 PRIMER_RIGHT_15_END_STABILITY=8.7000 PRIMER_PAIR_15_COMPL_ANY=4.00 PRIMER_PAIR_15_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_15=114 PRIMER_PAIR_PENALTY_16=0.1167 PRIMER_LEFT_16_PENALTY=0.028128 PRIMER_RIGHT_16_PENALTY=0.088604 PRIMER_LEFT_16_SEQUENCE=CATGTCCTTTATCCAGTAGCCAG PRIMER_RIGHT_16_SEQUENCE=AGAGCTGCCAGTGTAATCAAGAG PRIMER_LEFT_16=2031,23 PRIMER_RIGHT_16=2336,23 PRIMER_LEFT_16_TM=60.028 PRIMER_RIGHT_16_TM=60.089 PRIMER_LEFT_16_GC_PERCENT=47.826 PRIMER_RIGHT_16_GC_PERCENT=47.826 PRIMER_LEFT_16_SELF_ANY=4.00 PRIMER_RIGHT_16_SELF_ANY=5.00 PRIMER_LEFT_16_SELF_END=1.00 PRIMER_RIGHT_16_SELF_END=0.00 PRIMER_LEFT_16_MISPRIMING_SCORE=11.00, THE1b consensus sequence PRIMER_RIGHT_16_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_16_MISPRIMING_SCORE=22.00, reverse MER42a MER42 repetitive sequence: subfamily MER42a - a consensus PRIMER_LEFT_16_END_STABILITY=9.7000 PRIMER_RIGHT_16_END_STABILITY=6.7000 PRIMER_PAIR_16_COMPL_ANY=4.00 PRIMER_PAIR_16_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_16=306 PRIMER_PAIR_PENALTY_17=0.1182 PRIMER_LEFT_17_PENALTY=0.036623 PRIMER_RIGHT_17_PENALTY=0.081604 PRIMER_LEFT_17_SEQUENCE=ACTCTTGATTACACTGGCAGCTC PRIMER_RIGHT_17_SEQUENCE=TTTACATGCAGTGTGTTCTTTGG PRIMER_LEFT_17=2313,23 PRIMER_RIGHT_17=3275,23 PRIMER_LEFT_17_TM=59.963 PRIMER_RIGHT_17_TM=60.082 PRIMER_LEFT_17_GC_PERCENT=47.826 PRIMER_RIGHT_17_GC_PERCENT=39.130 PRIMER_LEFT_17_SELF_ANY=5.00 PRIMER_RIGHT_17_SELF_ANY=6.00 PRIMER_LEFT_17_SELF_END=2.00 PRIMER_RIGHT_17_SELF_END=0.00 PRIMER_LEFT_17_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_17_MISPRIMING_SCORE=12.00, L1MA2 3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence PRIMER_PAIR_17_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_17_END_STABILITY=7.9000 PRIMER_RIGHT_17_END_STABILITY=8.8000 PRIMER_PAIR_17_COMPL_ANY=6.00 PRIMER_PAIR_17_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_17=963 PRIMER_PAIR_PENALTY_18=0.1208 PRIMER_LEFT_18_PENALTY=0.066354 PRIMER_RIGHT_18_PENALTY=0.054491 PRIMER_LEFT_18_SEQUENCE=TGTATGTCTATTGGTTGTGCAGG PRIMER_RIGHT_18_SEQUENCE=GCATTGGTACGTAAAAGTTGAGG PRIMER_LEFT_18=4213,23 PRIMER_RIGHT_18=4354,23 PRIMER_LEFT_18_TM=59.934 PRIMER_RIGHT_18_TM=59.946 PRIMER_LEFT_18_GC_PERCENT=43.478 PRIMER_RIGHT_18_GC_PERCENT=43.478 PRIMER_LEFT_18_SELF_ANY=4.00 PRIMER_RIGHT_18_SELF_ANY=6.00 PRIMER_LEFT_18_SELF_END=0.00 PRIMER_RIGHT_18_SELF_END=2.00 PRIMER_LEFT_18_MISPRIMING_SCORE=12.00, reverse HSATI Human satellite I DNA HinfI fragment PRIMER_RIGHT_18_MISPRIMING_SCORE=10.00, MER44C Nonautonomous DNA transposon PRIMER_PAIR_18_MISPRIMING_SCORE=20.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_18_END_STABILITY=9.7000 PRIMER_RIGHT_18_END_STABILITY=8.2000 PRIMER_PAIR_18_COMPL_ANY=3.00 PRIMER_PAIR_18_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_18=142 PRIMER_PAIR_PENALTY_19=0.1285 PRIMER_LEFT_19_PENALTY=0.046971 PRIMER_RIGHT_19_PENALTY=0.081493 PRIMER_LEFT_19_SEQUENCE=GATGACAAGACAGTTTCCTACCG PRIMER_RIGHT_19_SEQUENCE=TCATAGAGCTGCCAGTGTAATCA PRIMER_LEFT_19=1814,23 PRIMER_RIGHT_19=2340,23 PRIMER_LEFT_19_TM=60.047 PRIMER_RIGHT_19_TM=59.919 PRIMER_LEFT_19_GC_PERCENT=47.826 PRIMER_RIGHT_19_GC_PERCENT=43.478 PRIMER_LEFT_19_SELF_ANY=3.00 PRIMER_RIGHT_19_SELF_ANY=5.00 PRIMER_LEFT_19_SELF_END=2.00 PRIMER_RIGHT_19_SELF_END=3.00 PRIMER_LEFT_19_MISPRIMING_SCORE=10.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_19_MISPRIMING_SCORE=12.00, HSATI Human satellite I DNA HinfI fragment PRIMER_PAIR_19_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_19_END_STABILITY=8.9000 PRIMER_RIGHT_19_END_STABILITY=6.9000 PRIMER_PAIR_19_COMPL_ANY=5.00 PRIMER_PAIR_19_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_19=527 =