PRIMER_SEQUENCE_ID=NM_020791 SEQUENCE=CCCCTCCTCCTCCTCACTCCTCGCCCTCCAGGGTAGCGGCTACCGGAGCGCTGCAGGGGGCTGCGCCTGCCTGCTCCGCCCCAGACCTGTCGGCGAAAGGTAGTTTATGCCAACGTGACTTCATTCATACAGATGAACCAAGGATCGGGATAGCAGTATAAAATTAGAATCAAGACAGCTGACTGCTCAGCAGGATGCCATCAACTAACAGAGCAGGCAGCCTGAAGGACCCTGAAATTGCAGAGCTCTTCTTCAAAGAAGATCCAGAGAAGCTCTTCACAGATCTCAGAGAAATTGGCCATGGAAGCTTTGGAGCAGTGTATTTTGCACGAGATGTGCGTACCAATGAAGTGGTGGCCATCAAGAAAATGTCTTATAGTGGAAAGCAGTCTACTGAGAAATGGCAGGATATTATTAAGGAAGTCAAGTTTCTACAAAGAATAAAACATCCCAACAGTATAGAATACAAAGGCTGTTATTTACGTGAACACACAGCATGGCTTGTAATGGAATATTGTTTAGGATCTGCTTCGGATTTACTAGAAGTTCACAAAAAGCCATTACAAGAAGTGGAAATAGCAGCAATTACACATGGTGCTCTTCAGGGATTAGCCTACTTACATTCTCATACTATGATTCATAGAGATATCAAAGCAGGAAATATCCTTCTGACAGAACCAGGCCAGGTGAAACTTGCTGACTTTGGCTCTGCTTCCATGGCATCACCTGCCAATTCCTTTGTGGGAACGCCGTATTGGATGGCCCCAGAAGTAATTTTAGCCATGGATGAAGGACAATATGATGGCAAAGTAGATGTGTGGTCTCTTGGAATAACATGTATTGAACTAGCGGAAAGGAAGCCTCCTTTATTTAATATGAATGCAATGAGTGCCTTATATCACATAGCCCAAAATGAATCCCCTACACTACAGTCTAATGAATGGTCTGATTATTTTCGCAACTTTGTAGATTCTTGCCTCCAGAAAATCCCTCAAGATCGACCTACATCAGAGGAACTTTTAAAGCACATATTTGTTCTTCGGGAGCGCCCTGAAACCGTGTTAATAGATCTCATTCAGAGGACAAAGGATGCAGTAAGAGAGCTGGACAATCTGCAGTATCGAAAGATGAAGAAACTCCTTTTCCAGGAGGCACATAATGGACCAGCAGTAGAAGCACAGGAAGAAGAAGAGGAACAAGATCATGGTGTTGGCCGGACAGGAACAGTTAATAGTGTTGGAAGTAATCAATCCATTCCCAGCATGTCCATCAGTGCCAGCAGCCAAAGCAGTAGTGTTAACAGTCTTCCAGATGTCTCAGATGACAAGAGTGAGCTAGACATGATGGAGGGAGACCACACAGTGATGTCTAACAGTTCTGTTATCCATTTAAAACCAGAGGAAGAAAATTACAGAGAAGAGGGAGATCCTAGAACAAGAGCATCAGATCCACAATCTCCACCCCAAGTATCTCGTCACAAATCACACTATCGTAATCGAGAACACTTTGCTACTATACGGACAGCATCACTGGTTACGAGGCAAATGCAAGAACATGAGCAGGACTCTGAGCTTAGAGAACAAATGTCTGGCTATAAGCGAATGAGGCGACAACATCAAAAGCAACTGATGACTCTGGAAAACAAGCTAAAGGCTGAGATGGATGAACATCGCCTCAGATTAGACAAAGATCTTGAAACTCAGCGTAACAATTTTGCTGCAGAAATGGAGAAACTTATCAAGAAACACCAGGCTGCCATGGAGAAAGAGGCTAAAGTGATGTCCAATGAAGAGAAAAAATTTCAGCAACATATTCAGGCCCAACAGAAGAAAGAACTGAATAGTTTTCTCGAGTCCCAGAAAAGAGAGTATAAACTTCGAAAAGAGCAGCTTAAAGAGGAGCTAAATGAAAACCAGAGTACCCCCAAAAAAGAAAAACAGGAGTGGCTTTCAAAGCAGAAGGAGAATATACAGCATTTCCAAGCAGAAGAAGAAGCTAACCTTCTTCGACGTCAAAGACAATACCTAGAGCTGGAATGCCGTCGCTTCAAGAGAAGAATGTTACTTGGGCGTCATAACTTAGAGCAGGACCTTGTCAGGGAGGAGTTAAACAAAAGACAGACTCAGAAGGACTTAGAGCATGCCATGCTACTCCGACAGCATGAATCTATGCAAGAACTGGAGTTCCGCCACCTCAACACAATTCAGAAGATGCGCTGTGAGTTGATCAGATTACAGCATCAAACTGAGCTCACTAACCAGCTGGAATATAATAAGCGAAGAGAACGAGAACTAAGACGAAAGCATGTCATGGAAGTTCGACAACAGCCTAAGAGTTTGAAGTCTAAAGAACTCCAAATAAAAAAGCAGTTTCAGGATACCTGCAAAATCCAAACCAGACAGTACAAAGCATTAAGAAATCACCTGCTGGAGACTACACCAAAGAGTGAGCACAAAGCTGTTCTGAAACGGCTCAAGGAGGAACAGACCCGGAAATTAGCTATCTTGGCTGAGCAGTATGATCACAGCATTAATGAAATGCTCTCCACACAAGCCCTGCGTTTGGATGAAGCACAGGAAGCAGAGTGCCAGGTTTTGAAGATGCAGCTGCAGCAGGAACTGGAGCTGTTGAATGCGTATCAGAGCAAAATCAAGATGCAAGCTGAGGCACAACATGATCGAGAGCTTCGCGAGCTTGAACAGAGGGTCTCCCTCCGGAGGGCACTCTTAGAACAAAAGATTGAAGAAGAGATGTTGGCTTTGCAGAATGAGCGCACAGAACGAATACGAAGCCTGTTGGAACGTCAAGCCAGAGAGATTGAAGCTTTTGACTCTGAAAGCATGAGACTAGGTTTTAGTAATATGGTCCTTTCTAATCTCTCCCCTGAGGCATTCAGCCACAGCTACCCGGGAGCTTCTGGTTGGTCACACAACCCTACTGGGGGTCCAGGACCTCACTGGGGTCATCCCATGGGTGGCCCACCACAAGCTTGGGGCCATCCAATGCAAGGTGGACCCCAGCCATGGGGTCACCCTTCAGGGCCAATGCAAGGGGTACCTCGAGGTAGCAGTATGGGAGTCCGCAATAGCCCCCAGGCTCTGAGGCGGACAGCTTCTGGGGGACGGACGGAGCAGGGCATGAGCAGAAGCACGAGTGTCACTTCACAAATATCCAATGGGTCACACATGTCTTATACATAACTTAATAATTGAGAGTGGCAATTCCGCTGGAGCTGTCTGCCAAAAGAAACTGCCTACAGACATCATCACAGCAGCCTCCTCACTTGGGTACTACAGTGTGGAAGCTGAGTGCATATGGTATATTTTATTCATTTTTGTAAAGCGTTCTGTTTTGTGTTTACTAATTGGGATGTCATAGTACTTGGCTGCCGGGTTTGTTTGTTTTTGGGGAAATTTTGAAAAGTGGAGTTGATATTAAAAATAAATGTGTATGTGTGTACATATATATACACACACATACACATATATTATGCATGTGGTGAAAAGAATTGGCTAGATAGGGGATTTTTCTGAACACTGCAAAAATAGAACGTAGCAAAATGGCTTCAGTTATCACTTTTGGGTGTCTGTATCCTAAGAAGTTTCTGAAAAGATCTAAAGCCTTTTTATCCCATATCCCAAATTCTTATGAGCCACTCACAGCAGGCAGCATATGTTGAAATAAGTTATTACTGGTACACACCTGCATTGCCTCACCAGTGTATTTATTTGTTATTAAATTGATCTGACTTCTCAGCCTCATTTGGACTAAAAAAAGAAAGCAGAAATCCATGAACACATTGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGAAATCCATGAACACTAAAGGACTTCATTGATTTTTTCAGAGAGTAGAAAACAACTTAGTTTTTCTTTTTTCCTGAATGCGTCATAGGCTTGTGAGTGATTTTTGTCCATTCAATTGTGCCTTCTTTGTATTATGATAAGATGGGGGTACTTAAGGAGATCACAAGTTGTGTGAGGATTGCATTAACAAACCTATGAGCCTTCAATGGGGAAGACCAGAAGGGTGAGAGGGGCCCTGAAAGTTCATATGGTGGGTATGTCCCGCAGCAGAGTGAGGAGATGAAGCTTACGTGTCCTGACGTTTTGTTGCTTATACTGTGATATCTCATCCTAGCTAAGCTCTATAATGCCCAAGACCCCAAACAGTACTTTTACTTTGTTTGTACAAAAACAAAGACATATAGCCAATACAAATCAAATGCCGGAGGTGTTTGATGCCATATTTGCAAATTGCCATCTATTGAAATTCTCGTCACACTACATAGACATAATTGTTATCTCCTTTTGGCTTATGTGATTTTCTGTTTACAAGTAGAATAGCCAATTATTTAAATGTTTAGTTGCCACAGTGAACCAGGAGTCACTGAGCCAATGACTTTACCAGCTGCTGACTAATCTTCATCACCACTGTAGATTTTGCTGCATGTGCAGGTCCTCTATTTTTAATTGCTGTTTTCGTTGCTGCAGTACTTTACAAACTTCTAGTTCGTTGAGACTTAGTGACCATTTGGCATCAAGTTAACATCACACAATAGGAAACACCACTTCCACAAGTCTCAAGCCTCAGTGCTAAAGTACTACTGAAAAGGAACTAGGAAGTTTGGCCAATT PRIMER_OPT_SIZE=23 PRIMER_MIN_SIZE=15 PRIMER_MAX_SIZE=26 PRIMER_MISPRIMING_LIBRARY=Human_rep_in_fasta.txt PRIMER_NUM_RETURN=20 PRIMER_NUM_NS_ACCEPTED=1 PRIMER_PRODUCT_SIZE_RANGE=100-999 PRIMER_EXPLAIN_FLAG=1 PRIMER_LEFT_EXPLAIN=considered 53761, GC content failed 909, low tm 28645, high tm 11891, high any compl 8, high end compl 32, high repeat similarity 32, long poly-x seq 127, ok 12117 PRIMER_RIGHT_EXPLAIN=considered 53769, GC content failed 783, low tm 29257, high tm 11326, high any compl 4, high end compl 3, high repeat similarity 7, long poly-x seq 126, ok 12263 PRIMER_PAIR_EXPLAIN=considered 629, unacceptable product size 564, high any compl 2, high end compl 6, ok 57 PRIMER_PAIR_PENALTY=0.0150 PRIMER_LEFT_PENALTY=0.014220 PRIMER_RIGHT_PENALTY=0.000796 PRIMER_LEFT_SEQUENCE=AGGCTAAAGTGATGTCCAATGAA PRIMER_RIGHT_SEQUENCE=AAGATAGCTAATTTCCGGGTCTG PRIMER_LEFT=1767,23 PRIMER_RIGHT=2505,23 PRIMER_LEFT_TM=60.014 PRIMER_RIGHT_TM=60.001 PRIMER_LEFT_GC_PERCENT=39.130 PRIMER_RIGHT_GC_PERCENT=43.478 PRIMER_LEFT_SELF_ANY=3.00 PRIMER_RIGHT_SELF_ANY=6.00 PRIMER_LEFT_SELF_END=3.00 PRIMER_RIGHT_SELF_END=1.00 PRIMER_LEFT_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_MISPRIMING_SCORE=12.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_END_STABILITY=6.9000 PRIMER_RIGHT_END_STABILITY=6.4000 PRIMER_PAIR_COMPL_ANY=4.00 PRIMER_PAIR_COMPL_END=0.00 PRIMER_PRODUCT_SIZE=739 PRIMER_PAIR_PENALTY_1=0.0150 PRIMER_LEFT_1_PENALTY=0.014220 PRIMER_RIGHT_1_PENALTY=0.000796 PRIMER_LEFT_1_SEQUENCE=AGGCTAAAGTGATGTCCAATGAA PRIMER_RIGHT_1_SEQUENCE=CAAGATAGCTAATTTCCGGGTCT PRIMER_LEFT_1=1767,23 PRIMER_RIGHT_1=2506,23 PRIMER_LEFT_1_TM=60.014 PRIMER_RIGHT_1_TM=60.001 PRIMER_LEFT_1_GC_PERCENT=39.130 PRIMER_RIGHT_1_GC_PERCENT=43.478 PRIMER_LEFT_1_SELF_ANY=3.00 PRIMER_RIGHT_1_SELF_ANY=6.00 PRIMER_LEFT_1_SELF_END=3.00 PRIMER_RIGHT_1_SELF_END=0.00 PRIMER_LEFT_1_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_1_MISPRIMING_SCORE=11.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_1_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_1_END_STABILITY=6.9000 PRIMER_RIGHT_1_END_STABILITY=7.6000 PRIMER_PAIR_1_COMPL_ANY=4.00 PRIMER_PAIR_1_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_1=740 PRIMER_PAIR_PENALTY_2=0.0224 PRIMER_LEFT_2_PENALTY=0.021648 PRIMER_RIGHT_2_PENALTY=0.000796 PRIMER_LEFT_2_SEQUENCE=TTGTCAGGGAGGAGTTAAACAAA PRIMER_RIGHT_2_SEQUENCE=CAAGATAGCTAATTTCCGGGTCT PRIMER_LEFT_2=2091,23 PRIMER_RIGHT_2=2506,23 PRIMER_LEFT_2_TM=60.022 PRIMER_RIGHT_2_TM=60.001 PRIMER_LEFT_2_GC_PERCENT=39.130 PRIMER_RIGHT_2_GC_PERCENT=43.478 PRIMER_LEFT_2_SELF_ANY=5.00 PRIMER_RIGHT_2_SELF_ANY=6.00 PRIMER_LEFT_2_SELF_END=0.00 PRIMER_RIGHT_2_SELF_END=0.00 PRIMER_LEFT_2_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_2_MISPRIMING_SCORE=11.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_2_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_2_END_STABILITY=7.0000 PRIMER_RIGHT_2_END_STABILITY=7.6000 PRIMER_PAIR_2_COMPL_ANY=3.00 PRIMER_PAIR_2_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_2=416 PRIMER_PAIR_PENALTY_3=0.0224 PRIMER_LEFT_3_PENALTY=0.021648 PRIMER_RIGHT_3_PENALTY=0.000796 PRIMER_LEFT_3_SEQUENCE=TTGTCAGGGAGGAGTTAAACAAA PRIMER_RIGHT_3_SEQUENCE=AAGATAGCTAATTTCCGGGTCTG PRIMER_LEFT_3=2091,23 PRIMER_RIGHT_3=2505,23 PRIMER_LEFT_3_TM=60.022 PRIMER_RIGHT_3_TM=60.001 PRIMER_LEFT_3_GC_PERCENT=39.130 PRIMER_RIGHT_3_GC_PERCENT=43.478 PRIMER_LEFT_3_SELF_ANY=5.00 PRIMER_RIGHT_3_SELF_ANY=6.00 PRIMER_LEFT_3_SELF_END=0.00 PRIMER_RIGHT_3_SELF_END=1.00 PRIMER_LEFT_3_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_3_MISPRIMING_SCORE=12.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_3_MISPRIMING_SCORE=22.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_3_END_STABILITY=7.0000 PRIMER_RIGHT_3_END_STABILITY=6.4000 PRIMER_PAIR_3_COMPL_ANY=3.00 PRIMER_PAIR_3_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_3=415 PRIMER_PAIR_PENALTY_4=0.0359 PRIMER_LEFT_4_PENALTY=0.014220 PRIMER_RIGHT_4_PENALTY=0.021648 PRIMER_LEFT_4_SEQUENCE=AGGCTAAAGTGATGTCCAATGAA PRIMER_RIGHT_4_SEQUENCE=TTTGTTTAACTCCTCCCTGACAA PRIMER_LEFT_4=1767,23 PRIMER_RIGHT_4=2113,23 PRIMER_LEFT_4_TM=60.014 PRIMER_RIGHT_4_TM=60.022 PRIMER_LEFT_4_GC_PERCENT=39.130 PRIMER_RIGHT_4_GC_PERCENT=39.130 PRIMER_LEFT_4_SELF_ANY=3.00 PRIMER_RIGHT_4_SELF_ANY=5.00 PRIMER_LEFT_4_SELF_END=3.00 PRIMER_RIGHT_4_SELF_END=1.00 PRIMER_LEFT_4_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_4_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_4_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_4_END_STABILITY=6.9000 PRIMER_RIGHT_4_END_STABILITY=6.7000 PRIMER_PAIR_4_COMPL_ANY=4.00 PRIMER_PAIR_4_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_4=347 PRIMER_PAIR_PENALTY_5=0.0359 PRIMER_LEFT_5_PENALTY=0.014220 PRIMER_RIGHT_5_PENALTY=0.021648 PRIMER_LEFT_5_SEQUENCE=AGGCTAAAGTGATGTCCAATGAA PRIMER_RIGHT_5_SEQUENCE=TTTTGTTTAACTCCTCCCTGACA PRIMER_LEFT_5=1767,23 PRIMER_RIGHT_5=2114,23 PRIMER_LEFT_5_TM=60.014 PRIMER_RIGHT_5_TM=60.022 PRIMER_LEFT_5_GC_PERCENT=39.130 PRIMER_RIGHT_5_GC_PERCENT=39.130 PRIMER_LEFT_5_SELF_ANY=3.00 PRIMER_RIGHT_5_SELF_ANY=5.00 PRIMER_LEFT_5_SELF_END=3.00 PRIMER_RIGHT_5_SELF_END=3.00 PRIMER_LEFT_5_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_5_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_5_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_5_END_STABILITY=6.9000 PRIMER_RIGHT_5_END_STABILITY=6.7000 PRIMER_PAIR_5_COMPL_ANY=4.00 PRIMER_PAIR_5_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_5=348 PRIMER_PAIR_PENALTY_6=0.0374 PRIMER_LEFT_6_PENALTY=0.036623 PRIMER_RIGHT_6_PENALTY=0.000796 PRIMER_LEFT_6_SEQUENCE=ACTATACGGACAGCATCACTGGT PRIMER_RIGHT_6_SEQUENCE=CAAGATAGCTAATTTCCGGGTCT PRIMER_LEFT_6=1511,23 PRIMER_RIGHT_6=2506,23 PRIMER_LEFT_6_TM=59.963 PRIMER_RIGHT_6_TM=60.001 PRIMER_LEFT_6_GC_PERCENT=47.826 PRIMER_RIGHT_6_GC_PERCENT=43.478 PRIMER_LEFT_6_SELF_ANY=4.00 PRIMER_RIGHT_6_SELF_ANY=6.00 PRIMER_LEFT_6_SELF_END=3.00 PRIMER_RIGHT_6_SELF_END=0.00 PRIMER_LEFT_6_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_6_MISPRIMING_SCORE=11.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_6_MISPRIMING_SCORE=20.00, MER25 Older LINE1 5' end region - a consensus PRIMER_LEFT_6_END_STABILITY=7.9000 PRIMER_RIGHT_6_END_STABILITY=7.6000 PRIMER_PAIR_6_COMPL_ANY=4.00 PRIMER_PAIR_6_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_6=996 PRIMER_PAIR_PENALTY_7=0.0374 PRIMER_LEFT_7_PENALTY=0.036623 PRIMER_RIGHT_7_PENALTY=0.000796 PRIMER_LEFT_7_SEQUENCE=ACTATACGGACAGCATCACTGGT PRIMER_RIGHT_7_SEQUENCE=AAGATAGCTAATTTCCGGGTCTG PRIMER_LEFT_7=1511,23 PRIMER_RIGHT_7=2505,23 PRIMER_LEFT_7_TM=59.963 PRIMER_RIGHT_7_TM=60.001 PRIMER_LEFT_7_GC_PERCENT=47.826 PRIMER_RIGHT_7_GC_PERCENT=43.478 PRIMER_LEFT_7_SELF_ANY=4.00 PRIMER_RIGHT_7_SELF_ANY=6.00 PRIMER_LEFT_7_SELF_END=3.00 PRIMER_RIGHT_7_SELF_END=1.00 PRIMER_LEFT_7_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_7_MISPRIMING_SCORE=12.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_7_MISPRIMING_SCORE=20.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_LEFT_7_END_STABILITY=7.9000 PRIMER_RIGHT_7_END_STABILITY=6.4000 PRIMER_PAIR_7_COMPL_ANY=4.00 PRIMER_PAIR_7_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_7=995 PRIMER_PAIR_PENALTY_8=0.0395 PRIMER_LEFT_8_PENALTY=0.038744 PRIMER_RIGHT_8_PENALTY=0.000796 PRIMER_LEFT_8_SEQUENCE=CGAGAACTAAGACGAAAGCATGT PRIMER_RIGHT_8_SEQUENCE=CAAGATAGCTAATTTCCGGGTCT PRIMER_LEFT_8=2285,23 PRIMER_RIGHT_8=2506,23 PRIMER_LEFT_8_TM=59.961 PRIMER_RIGHT_8_TM=60.001 PRIMER_LEFT_8_GC_PERCENT=43.478 PRIMER_RIGHT_8_GC_PERCENT=43.478 PRIMER_LEFT_8_SELF_ANY=4.00 PRIMER_RIGHT_8_SELF_ANY=6.00 PRIMER_LEFT_8_SELF_END=2.00 PRIMER_RIGHT_8_SELF_END=0.00 PRIMER_LEFT_8_MISPRIMING_SCORE=12.00, LTR5 LTR from human endogenous retrovirus 5' LTR, clone HERV-K18 PRIMER_RIGHT_8_MISPRIMING_SCORE=11.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_8_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_8_END_STABILITY=6.6000 PRIMER_RIGHT_8_END_STABILITY=7.6000 PRIMER_PAIR_8_COMPL_ANY=4.00 PRIMER_PAIR_8_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_8=222 PRIMER_PAIR_PENALTY_9=0.0395 PRIMER_LEFT_9_PENALTY=0.038744 PRIMER_RIGHT_9_PENALTY=0.000796 PRIMER_LEFT_9_SEQUENCE=CGAGAACTAAGACGAAAGCATGT PRIMER_RIGHT_9_SEQUENCE=AAGATAGCTAATTTCCGGGTCTG PRIMER_LEFT_9=2285,23 PRIMER_RIGHT_9=2505,23 PRIMER_LEFT_9_TM=59.961 PRIMER_RIGHT_9_TM=60.001 PRIMER_LEFT_9_GC_PERCENT=43.478 PRIMER_RIGHT_9_GC_PERCENT=43.478 PRIMER_LEFT_9_SELF_ANY=4.00 PRIMER_RIGHT_9_SELF_ANY=6.00 PRIMER_LEFT_9_SELF_END=2.00 PRIMER_RIGHT_9_SELF_END=1.00 PRIMER_LEFT_9_MISPRIMING_SCORE=12.00, LTR5 LTR from human endogenous retrovirus 5' LTR, clone HERV-K18 PRIMER_RIGHT_9_MISPRIMING_SCORE=12.00, LTR13 LTR from a putative human endogenous retrovirus PRIMER_PAIR_9_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_9_END_STABILITY=6.6000 PRIMER_RIGHT_9_END_STABILITY=6.4000 PRIMER_PAIR_9_COMPL_ANY=4.00 PRIMER_PAIR_9_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_9=221 PRIMER_PAIR_PENALTY_10=0.0508 PRIMER_LEFT_10_PENALTY=0.036623 PRIMER_RIGHT_10_PENALTY=0.014220 PRIMER_LEFT_10_SEQUENCE=ACTATACGGACAGCATCACTGGT PRIMER_RIGHT_10_SEQUENCE=CTTCATTGGACATCACTTTAGCC PRIMER_LEFT_10=1511,23 PRIMER_RIGHT_10=1790,23 PRIMER_LEFT_10_TM=59.963 PRIMER_RIGHT_10_TM=60.014 PRIMER_LEFT_10_GC_PERCENT=47.826 PRIMER_RIGHT_10_GC_PERCENT=43.478 PRIMER_LEFT_10_SELF_ANY=4.00 PRIMER_RIGHT_10_SELF_ANY=3.00 PRIMER_LEFT_10_SELF_END=3.00 PRIMER_RIGHT_10_SELF_END=1.00 PRIMER_LEFT_10_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_10_MISPRIMING_SCORE=12.00, reverse MER21B a consensus PRIMER_PAIR_10_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_10_END_STABILITY=7.9000 PRIMER_RIGHT_10_END_STABILITY=8.7000 PRIMER_PAIR_10_COMPL_ANY=3.00 PRIMER_PAIR_10_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_10=280 PRIMER_PAIR_PENALTY_11=0.0508 PRIMER_LEFT_11_PENALTY=0.036623 PRIMER_RIGHT_11_PENALTY=0.014220 PRIMER_LEFT_11_SEQUENCE=ACTATACGGACAGCATCACTGGT PRIMER_RIGHT_11_SEQUENCE=TTCATTGGACATCACTTTAGCCT PRIMER_LEFT_11=1511,23 PRIMER_RIGHT_11=1789,23 PRIMER_LEFT_11_TM=59.963 PRIMER_RIGHT_11_TM=60.014 PRIMER_LEFT_11_GC_PERCENT=47.826 PRIMER_RIGHT_11_GC_PERCENT=39.130 PRIMER_LEFT_11_SELF_ANY=4.00 PRIMER_RIGHT_11_SELF_ANY=3.00 PRIMER_LEFT_11_SELF_END=3.00 PRIMER_RIGHT_11_SELF_END=3.00 PRIMER_LEFT_11_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_11_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_11_MISPRIMING_SCORE=23.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_11_END_STABILITY=7.9000 PRIMER_RIGHT_11_END_STABILITY=9.4000 PRIMER_PAIR_11_COMPL_ANY=3.00 PRIMER_PAIR_11_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_11=279 PRIMER_PAIR_PENALTY_12=0.0541 PRIMER_LEFT_12_PENALTY=0.048411 PRIMER_RIGHT_12_PENALTY=0.005674 PRIMER_LEFT_12_SEQUENCE=GCTTCAGTTATCACTTTTGGGTG PRIMER_RIGHT_12_SEQUENCE=TTTGTAAAGTACTGCAGCAACGA PRIMER_LEFT_12=3562,23 PRIMER_RIGHT_12=4529,23 PRIMER_LEFT_12_TM=60.048 PRIMER_RIGHT_12_TM=59.994 PRIMER_LEFT_12_GC_PERCENT=43.478 PRIMER_RIGHT_12_GC_PERCENT=39.130 PRIMER_LEFT_12_SELF_ANY=6.00 PRIMER_RIGHT_12_SELF_ANY=6.00 PRIMER_LEFT_12_SELF_END=0.00 PRIMER_RIGHT_12_SELF_END=0.00 PRIMER_LEFT_12_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_12_MISPRIMING_SCORE=11.00, L1PA11 3'-end of L1 repeat (subfamily L1PA11) - a consensus sequence PRIMER_PAIR_12_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_12_END_STABILITY=9.4000 PRIMER_RIGHT_12_END_STABILITY=8.4000 PRIMER_PAIR_12_COMPL_ANY=6.00 PRIMER_PAIR_12_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_12=968 PRIMER_PAIR_PENALTY_13=0.0541 PRIMER_LEFT_13_PENALTY=0.048411 PRIMER_RIGHT_13_PENALTY=0.005674 PRIMER_LEFT_13_SEQUENCE=GCTTCAGTTATCACTTTTGGGTG PRIMER_RIGHT_13_SEQUENCE=TTGTAAAGTACTGCAGCAACGAA PRIMER_LEFT_13=3562,23 PRIMER_RIGHT_13=4528,23 PRIMER_LEFT_13_TM=60.048 PRIMER_RIGHT_13_TM=59.994 PRIMER_LEFT_13_GC_PERCENT=43.478 PRIMER_RIGHT_13_GC_PERCENT=39.130 PRIMER_LEFT_13_SELF_ANY=6.00 PRIMER_RIGHT_13_SELF_ANY=6.00 PRIMER_LEFT_13_SELF_END=0.00 PRIMER_RIGHT_13_SELF_END=0.00 PRIMER_LEFT_13_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_13_MISPRIMING_SCORE=12.00, L1PA11 3'-end of L1 repeat (subfamily L1PA11) - a consensus sequence PRIMER_PAIR_13_MISPRIMING_SCORE=21.00, L1PA11 3'-end of L1 repeat (subfamily L1PA11) - a consensus sequence PRIMER_LEFT_13_END_STABILITY=9.4000 PRIMER_RIGHT_13_END_STABILITY=8.4000 PRIMER_PAIR_13_COMPL_ANY=6.00 PRIMER_PAIR_13_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_13=967 PRIMER_PAIR_PENALTY_14=0.0572 PRIMER_LEFT_14_PENALTY=0.036623 PRIMER_RIGHT_14_PENALTY=0.020535 PRIMER_LEFT_14_SEQUENCE=ACTATACGGACAGCATCACTGGT PRIMER_RIGHT_14_SEQUENCE=ATGTTCATCCATCTCAGCCTTTA PRIMER_LEFT_14=1511,23 PRIMER_RIGHT_14=1669,23 PRIMER_LEFT_14_TM=59.963 PRIMER_RIGHT_14_TM=59.979 PRIMER_LEFT_14_GC_PERCENT=47.826 PRIMER_RIGHT_14_GC_PERCENT=39.130 PRIMER_LEFT_14_SELF_ANY=4.00 PRIMER_RIGHT_14_SELF_ANY=4.00 PRIMER_LEFT_14_SELF_END=3.00 PRIMER_RIGHT_14_SELF_END=2.00 PRIMER_LEFT_14_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_14_MISPRIMING_SCORE=11.00, L1MA10 3'-end of L1 repeat (subfamily L1MA10) - a consensus sequence PRIMER_PAIR_14_MISPRIMING_SCORE=21.00, Tigger1 Autonomous DNA transposon PRIMER_LEFT_14_END_STABILITY=7.9000 PRIMER_RIGHT_14_END_STABILITY=6.3000 PRIMER_PAIR_14_COMPL_ANY=3.00 PRIMER_PAIR_14_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_14=159 PRIMER_PAIR_PENALTY_15=0.0583 PRIMER_LEFT_15_PENALTY=0.036623 PRIMER_RIGHT_15_PENALTY=0.021648 PRIMER_LEFT_15_SEQUENCE=ACTATACGGACAGCATCACTGGT PRIMER_RIGHT_15_SEQUENCE=TTTGTTTAACTCCTCCCTGACAA PRIMER_LEFT_15=1511,23 PRIMER_RIGHT_15=2113,23 PRIMER_LEFT_15_TM=59.963 PRIMER_RIGHT_15_TM=60.022 PRIMER_LEFT_15_GC_PERCENT=47.826 PRIMER_RIGHT_15_GC_PERCENT=39.130 PRIMER_LEFT_15_SELF_ANY=4.00 PRIMER_RIGHT_15_SELF_ANY=5.00 PRIMER_LEFT_15_SELF_END=3.00 PRIMER_RIGHT_15_SELF_END=1.00 PRIMER_LEFT_15_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_15_MISPRIMING_SCORE=11.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_15_MISPRIMING_SCORE=22.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_15_END_STABILITY=7.9000 PRIMER_RIGHT_15_END_STABILITY=6.7000 PRIMER_PAIR_15_COMPL_ANY=3.00 PRIMER_PAIR_15_COMPL_END=2.00 PRIMER_PRODUCT_SIZE_15=603 PRIMER_PAIR_PENALTY_16=0.0583 PRIMER_LEFT_16_PENALTY=0.036623 PRIMER_RIGHT_16_PENALTY=0.021648 PRIMER_LEFT_16_SEQUENCE=ACTATACGGACAGCATCACTGGT PRIMER_RIGHT_16_SEQUENCE=TTTTGTTTAACTCCTCCCTGACA PRIMER_LEFT_16=1511,23 PRIMER_RIGHT_16=2114,23 PRIMER_LEFT_16_TM=59.963 PRIMER_RIGHT_16_TM=60.022 PRIMER_LEFT_16_GC_PERCENT=47.826 PRIMER_RIGHT_16_GC_PERCENT=39.130 PRIMER_LEFT_16_SELF_ANY=4.00 PRIMER_RIGHT_16_SELF_ANY=5.00 PRIMER_LEFT_16_SELF_END=3.00 PRIMER_RIGHT_16_SELF_END=3.00 PRIMER_LEFT_16_MISPRIMING_SCORE=11.00, L1PA7 3'-end of L1 repeat (subfamily L1PA7) - a consensus sequence PRIMER_RIGHT_16_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_16_MISPRIMING_SCORE=21.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_16_END_STABILITY=7.9000 PRIMER_RIGHT_16_END_STABILITY=6.7000 PRIMER_PAIR_16_COMPL_ANY=3.00 PRIMER_PAIR_16_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_16=604 PRIMER_PAIR_PENALTY_17=0.0762 PRIMER_LEFT_17_PENALTY=0.057845 PRIMER_RIGHT_17_PENALTY=0.018344 PRIMER_LEFT_17_SEQUENCE=ATGGCAAAGTAGATGTGTGGTCT PRIMER_RIGHT_17_SEQUENCE=ATTGTGGATCTGATGCTCTTGTT PRIMER_LEFT_17=801,23 PRIMER_RIGHT_17=1454,23 PRIMER_LEFT_17_TM=59.942 PRIMER_RIGHT_17_TM=60.018 PRIMER_LEFT_17_GC_PERCENT=43.478 PRIMER_RIGHT_17_GC_PERCENT=39.130 PRIMER_LEFT_17_SELF_ANY=3.00 PRIMER_RIGHT_17_SELF_ANY=5.00 PRIMER_LEFT_17_SELF_END=0.00 PRIMER_RIGHT_17_SELF_END=0.00 PRIMER_LEFT_17_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_17_MISPRIMING_SCORE=12.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_PAIR_17_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_17_END_STABILITY=7.6000 PRIMER_RIGHT_17_END_STABILITY=7.0000 PRIMER_PAIR_17_COMPL_ANY=4.00 PRIMER_PAIR_17_COMPL_END=0.00 PRIMER_PRODUCT_SIZE_17=654 PRIMER_PAIR_PENALTY_18=0.0784 PRIMER_LEFT_18_PENALTY=0.057845 PRIMER_RIGHT_18_PENALTY=0.020535 PRIMER_LEFT_18_SEQUENCE=ATGGCAAAGTAGATGTGTGGTCT PRIMER_RIGHT_18_SEQUENCE=ATGTTCATCCATCTCAGCCTTTA PRIMER_LEFT_18=801,23 PRIMER_RIGHT_18=1669,23 PRIMER_LEFT_18_TM=59.942 PRIMER_RIGHT_18_TM=59.979 PRIMER_LEFT_18_GC_PERCENT=43.478 PRIMER_RIGHT_18_GC_PERCENT=39.130 PRIMER_LEFT_18_SELF_ANY=3.00 PRIMER_RIGHT_18_SELF_ANY=4.00 PRIMER_LEFT_18_SELF_END=0.00 PRIMER_RIGHT_18_SELF_END=2.00 PRIMER_LEFT_18_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_18_MISPRIMING_SCORE=11.00, L1MA10 3'-end of L1 repeat (subfamily L1MA10) - a consensus sequence PRIMER_PAIR_18_MISPRIMING_SCORE=21.00, L1MB3 3'-end of L1 repeat (subfamily L1MB3) - a consensus sequence PRIMER_LEFT_18_END_STABILITY=7.6000 PRIMER_RIGHT_18_END_STABILITY=6.3000 PRIMER_PAIR_18_COMPL_ANY=5.00 PRIMER_PAIR_18_COMPL_END=1.00 PRIMER_PRODUCT_SIZE_18=869 PRIMER_PAIR_PENALTY_19=0.0828 PRIMER_LEFT_19_PENALTY=0.014220 PRIMER_RIGHT_19_PENALTY=0.068602 PRIMER_LEFT_19_SEQUENCE=AGGCTAAAGTGATGTCCAATGAA PRIMER_RIGHT_19_SEQUENCE=TGCTTTCGTCTTAGTTCTCGTTC PRIMER_LEFT_19=1767,23 PRIMER_RIGHT_19=2304,23 PRIMER_LEFT_19_TM=60.014 PRIMER_RIGHT_19_TM=60.069 PRIMER_LEFT_19_GC_PERCENT=39.130 PRIMER_RIGHT_19_GC_PERCENT=43.478 PRIMER_LEFT_19_SELF_ANY=3.00 PRIMER_RIGHT_19_SELF_ANY=3.00 PRIMER_LEFT_19_SELF_END=3.00 PRIMER_RIGHT_19_SELF_END=0.00 PRIMER_LEFT_19_MISPRIMING_SCORE=12.00, reverse MLT1e (MLT1e subfamily) - consensus sequence PRIMER_RIGHT_19_MISPRIMING_SCORE=12.00, L1 Human L1 interspersed repetitive sequence - full length copy PRIMER_PAIR_19_MISPRIMING_SCORE=23.00, MLT1e (MLT1e subfamily) - consensus sequence PRIMER_LEFT_19_END_STABILITY=6.9000 PRIMER_RIGHT_19_END_STABILITY=8.4000 PRIMER_PAIR_19_COMPL_ANY=5.00 PRIMER_PAIR_19_COMPL_END=3.00 PRIMER_PRODUCT_SIZE_19=538 =