Users can use any SQLite tool to browser and edit the RNA-Seq expression data table. We use the RefSeq information as the Gene name standard and as the primary index key. The expression RPKM values can be inputted in the user.agv table template. You are welcome to use your own RNA-Seq data, simply following the RefSeq gene names and input the RPKM and log transformed RPKM value (red colored column name). Normal table is for the background normal tissue expression background information, and the tumor table is for the cancer cell expression levels. The description of each column in each table is listed below:

gene: geneName; name; chrom; strand; txStart; txEnd; scrX; scrY

normal: geneName; nr; nrlog

tumor: bcld; geneName; tr; trlog

sample: barcode; bcld; age; gender; pm; pn; pt; flag

You can exchange your own RNA-Seq data with other colleagues by sending them the user.agv file and sync with itune program.